Diversity Analysis of Genes Coding for Phytoene Synthase And Their Corresponding RNA And Proteins

National Bureau of Plant Genetic Resources, New Delhi

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S.N.

Protein ID

Species

Alpha helix

 

Extended strand

 

Random coil

 

1

NP_197225.1

Arabidopsis thaliana

42.65%

 

18.25%

 

39.10%

 

2

NP_001154715.1

Arabidopsis thaliana

43.25%

 

16.93%

 

39.82%

 

3

NP_001031895.1

Arabidopsis thaliana

42.65%

 

18.25%

 

39.10%

 

4

XP_002327564.1

Populus trichocarpa

44.83%

 

13.33%

 

41.84%

 

5

XP_002304008.1

Populus trichocarpa

51.68%

 

12.42%

 

35.91%

 

6

XP_002306754.1

Populus trichocarpa

42.96%

 

16.30%

 

40.74%

 

7

XP_002532975.1

Ricinus communis

44.86%

 

15.42%

 

39.72%

 

8

XP_002283193.1

Vitis vinifera

37.63%

 

18.69%

 

43.69%

 

9

NP_001058647.1

Oryza sativa Japonica Group

43.33%

 

15.00%

 

41.67%

 

10

NP_001063892.1

Oryza sativa Japonica Group

48.26%

 

14.68%

 

37.06%

 

11

NP_001067325.1

Oryza sativa Japonica Group

38.67%

 

17.13%

 

44.20%

 

12

XP_002462810.1

Sorghum bicolor

48.07%

 

12.02%

 

39.91%

 

13

XP_002442578.1

Sorghum bicolor

45.34%

 

18.89%

 

35.77%

 

14

XP_002297643.1

Populus trichocarpa

56.69%

 

7.39%

 

35.92%

 

15

XP_002302132.1

Populus trichocarpa

38.16%

 

15.13%

 

46.71%

 

Doveloped By: Vijay Kumar Sharma, RA, NBPGR, New Delhi-110012