Diversity Analysis of Genes Coding for Phytoene Synthase And Their Corresponding RNA And Proteins

National Bureau of Plant Genetic Resources, New Delhi

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S.N.

Protein

Species

Number of amino acids

 

Molecular weight:

 

Theoretical pI

 

Total number of negatively charged residues (Asp + Glu)

 

Total number of positively charged residues (Arg + Lys)

 

Instability index

 

 

Aliphatic index

 

GAH

1

NP_197225.1

Arabidopsis thaliana

422

 

47486.6

 

9.22

 

48

 

59

 

50.76

 

89.91

 

-0.23

2

NP_001154715.1

Arabidopsis thaliana

437

 

49222.8

 

9.25

 

49

 

61

 

50.55

 

91.72

 

-0.194

 

3

NP_001031895.1

Arabidopsis thaliana

422

 

47486.6

 

9.22

 

48

 

59

 

50.76

 

89.91

 

-0.234

 

4

XP_002327564.1

 

Populus trichocarpa

435

 

48737.0

 

8.90

 

52

 

59

 

43.32

 

86.55

 

-0.222

 

5

XP_002304008.1

Populus trichocarpa

298

 

34600.6

 

5.36

 

41

 

37

 

45.95

 

84.53

 

-0.280

 

6

XP_002306754.1

Populus trichocarpa

405

 

45399.1

 

9.12

 

48

 

58

 

44.99

 

85.06

 

-0.239

 

7

XP_002532975.1

 

Ricinus communis

428

 

48034.2

 

 

8.86

 

52

 

58

 

46.10

 

89.39

 

-0.211

 

8

XP_002527067.1

Vitis vinifera

385

 

44204.6

 

5.87

 

51

 

47

 

55.26

 

83.92

 

-0.311

 

9

XP_002271575.1

Oryza sativa Japonica Group

437

 

49643.7

 

8.42

 

56

 

59

 

55.03

 

82.61

 

-0.330

 

10

XP_002283193.1

 

Oryza sativa Japonica Group

396

 

45152.8

 

9.15

 

49

 

58

 

44.70

 

84.72

 

-0.328

 

11

NP_001058647.1

Oryza sativa Japonica Group

420

 

47582.8

 

 

8.96

 

50

 

58

 

63.06

 

89.71

 

-0.288

 

12

NP_001063892.1

Sorghum bicolor

402

 

44713.9

 

5.56

 

53

 

46

 

55.97

 

82.66

 

-0.249

 

13

NP_001067325.1

 

Sorghum bicolor

362

39919.1

7.87

48

49

55.07

79.59

-0.46

14

XP_002462810.1

 

Populus trichocarpa

441

48958.6

9.01

50

57

64.38

77.14

-0.37

15

XP_002442578.1

 

Populus trichocarpa

397

 

44473.8

 

8.19

 

50

 

52

 

56.45

  

84.63

 

-0.276

 

Doveloped By: Vijay Kumar Sharma, RA, NBPGR, New Delhi-110012