1. Ganeshan, P., Jain, A., Parmar, B., Rao, A.R., Sreenu, K., Mishra, P., Mesapogu, S., Subrahmanyam, D., Ram, T., Sarla, N. and Rai, V. (2016). Identification of salt tolerant rice lines among interspecific BILs developed by crossing Oryza sativa × O. rufipogon and O. sativa × O. nivara. Australian Journal of Crop Science, 10(2), 220-228.
2. Kumar, M., Sarangi, A., Singh, D.K., Rao, A. R. and Sudhishri, S. (2016). Response of wheat cultivars to foliar potassium fertilization under irrigated saline environment. Journal of Applied and Natural Science, 8(1), 429-436.
3. Chaturvedi, V., Kumar, A. Mishra, I.M., Singh, J. K., Sahoo, R. N., Jha, G.K. and Lal, S. B. (2016). Study on interventions to reduce vibration transmission to power tiller operator. Journal of Applied and Natural Science. 8 (1): 265 – 272. ISSN: 0974-9411 (Print), 2231-5209 (Online).
4. Jyotika Bhati, Pavan Kumar Chaduvula, Sanjeev Kumar*, Soma S. Marla and Anil Rai (2-16); In-silico prediction and functional analysis of salt stress responsive genes in Rice (Oryza sativa), J Rice Res 4: 164. doi:10.4172/2375-4338.1000164
5. Pandey N, Grover M, Rai A (2016) Conservation of Properties of Outer Membranes Protein across Host Genera of Pasteurella multocida Suggests Common Mechanism of Action. Mol Biol 5:162. doi:10.4172/2168-9547.1000162
6. Badoni, S., Das, S., Sayal, Y.K., Gopalakrishnan, S., Singh, A.K., Rao, A.R., Agarwal, P., Parida, S.K. and Tyagi, A.K. (2016) Genome-wide generation and use of informative intron-spanning and intron-length polymorphism markers for high-throughput genetic analysis in rice. Scientific Reports, 6: 23765 (DOI: 10.1038/srep23765).
7. Tiwari, S., Krishnamurthy, S.L., Kumar, V., Singh, B., Rao, A. R., Mithra, S.V.A., Rai, V., Singh, A.K., Singh, N.K. (2016). Mapping QTLs for Salt Tolerance in Rice (Oryza sativa L.) by Bulked Segregant Analysis of Recombinant Inbred Lines Using 50K SNP Chip. PLoS ONE, 11:4, DOI: 10.1371/journal.pone.0153610
8. Gautam, Aditi, Sharma, Asuda, Sarika, Fatma, Samar, Arora, Vasu, Iquebal, M.A., Nandi, S., Sundaray, J.K., Jayasanker, J., Rai, Anil, Kumar, Dinesh (2016). Development of antimicrobial peptide prediction tool for aquaculture industries. Probiotics and Antimicrobial Proteins. http://link.springer.com/article/10.1007/s12602-016-9215-0
9. Grover, M., Pandey, N. and Rai, A. (2016) First report on Quantum Computational Logic in Biological Networks, International Journal of Innovative Research in Technology and Science, 4:22-24
10. Mohammad Samir Farooqi, DC Mishra, Niyati Rai, DP Singh, Anil Rai, KK Chaturvedi, Ratna Prabha and Manjeet Kaur (2016). Genome-wide relative analysis of codon usage bias and codon context pattern in the bacteria Salinibacter ruber, Chromohalobacter salexigens and Rhizobium etli. in Biochemistry and Analytical Biochemistry. 5:257. doi:10.4172/2161-1009.1000257.
11. Virupaksh U. Patil1, Vanishree, G, Hemant B. Kardile, Vikas Jindal, SK Dutta, KK Chaturvedi and SK Chakrabarti (2016). In Silico Analysis of Genome wide microsatellite DNA marker in Coffee (Coffea arabica L.). International Journal of Computational Bioinformatics and In Silico Modeling. 5(3):815-818.
12. Meher, P.K., Sahu, T.K., Rao, A. R., Wahi, S.D.(2016). Identification of donor splice sites using support vector machine: a computational approach based on positional, compositional and dependency features. Algorithms for Molecular Biology, 11:16, DOI: 10.1186/s13015-016-0078-4.
13. Meher, P.K., Sahu, T.K., Rao, A. R., Wahi, S.D.(2016). A computational approach for prediction of donor splice sites with improved accuracy. Journal of Theoretical Biology, 404, 285-294. (http://dx.doi.org/10.1016/j.jtbi.2016.06.013)
14. Virupaksh U Patil, Vanishree G, Vivek Hegde, KK Chaturvedi and SK Chakrabarti (2016). Computational Analysis of Short Tandem Repeat (STR) Markers from Genome Wide Expression Regions of Sugar Beet (Beeta vulgaris) In Journal of Applied Bioinformatics and Computational Biology, 5:1. doi: 10.4172/2329-9533.1000125
15. Kumar, R.R., Goswami, S., Singh, K., Dubey,K., Singh, S., sharma, R., Verma,N., Kala, Y.K., Rai, G., Grover, M., Mishra, D.C., Singh, B., Pathak, H., Chinnusamy, V., Rai, A. and Praveen, S. (2016)Identification of putative RuBisCo activase (TaRca1) ˗ the catalytic chaperone regulating carbon assimilatory pathway in wheat (Triticum aestivum) under the heat stress . Front. Plant Sci. | doi: 10.3389/fpls.2016.00986, Thomson Reuters IF:4.475
16. Shachi Gahoi1‡, Neetesh Pandey2‡, B.V. Suresh1, Monendra Grover2*, S.S. Marla1 and Anil Rai, A computational study on genetic diversity of shatterproof1 and shatterproof2 genes in some members of Oleraceae and its molecular implications Accepted for Publication in Plant Omics Journal, NAAS rating : 6.00
17. Meher, P.K., Sahu, T.K and Rao, A.R. (2016). Identification of species based on DNA barcode using k-mer feature vector and Random forest classifier. Gene, doi:10.1016/j.gene.2016.07.010. Thomson Reuters IF:2.319
18. Jaiswal, V., Gahlaut, V., Meher, P.K., Mir, R.R., Jaiswal, J.P., Rao, A.R., Balyan, H.S. and Gupta, P.K. (2016). Genome Wide Single Locus Single Trait, Multi-Locus and Multi-Trait Association Mapping for Some Important Agronomic Traits in Common Wheat (T. aestivum L.), PLoS ONE, 11(7): e0159343, doi:10.1371/journal.pone.0159343. Thomson Reuters IF:3.057
19. Gupta, S., Singh, Y., Kumar, H., Raj, U., Rao, A.R., Varadwaj, P.K. (2016). Identification of novel abiotic stress proteins in Triticum aestivum through functional annotation of hypothetical proteins. Interdisciplinary Sciences: Computational Life Sciences, doi:10.1007/s12539-016-0178-3. Thomson Reuters IF:0.853
20. Suneha Goswami, Ranjeet R. Kumar, Kavita Dubey, Jyoti P. Singh, Sachidanand Tiwari, Ashok Kumar, Shuchi Smita, Dwijesh C. Mishra, Sanjeev Kumar, Monendra Grover, Jasdeep C. Padaria, Yugal K. Kala, Gyanendra P. Singh, Himanshu Pathak, Viswanathan Chinnusamy, Anil Rai, Shelly Praveen and Raj D. Rai. (2016). SSH analysis of endosperm transcripts and characterization of heat stress regulated expressed sequence tags in bread wheat. Frontiers in Plant Science, 7, 1230.
21. Garima Vats, Monendra Grover, Avantika Singh, Nidhi Chandra, Neetesh Pandey and Anil Rai (2016) Role of palmitoylation and nitration in modification of large number of proteins associated with drought stress in plants. Agrica, 2016, 5: 59-62
22. Srivastava, R., Bajaj, D., Sayal, Y.K., Meher, P.K., Upadhyaya, H.D., Kumar, R., Tripathi, S., Bharadwaj, C., Rao, A.R. and Parida, S.K. (2016). Genome-wide development and deployment of informative intron-spanning and intron-length polymorphism markers for genomics-assisted breeding applications in chickpea. Plant Science, 252, 374-387.
23. Meher, P.K., Sahu, T.K., Rao, A.R. and Wahi, S.D. (2016). Discriminating coding from non-coding regions based on codon structure and methylation-mediated substitution: An application in rice and cattle. Computers and Electronics in Agriculture, 129, 66-73, DOI:10.1016/j.compag.2016.09.013
24. Meher, P.K., Sahu, T.K., Rao, A. R. (2016). Identification of species based on DNA barcode using k-mer feature vector and Random forest classifier. Gene, 592(2), 316-324.
25. Aarti Singh and Anu Sharma (2016). Evaluation of a Secured Interface for Intelligent Recommendations for Web Personalization, International Journal of Computing, 6(2), Pp. 64-69.
26. Anu Sharma, Ali T. Al-khwaldeh and Aarti Singh (2016). ABSEP3S- An Agent Based Security Engine for Privacy Preserving in Personalized Search, International Journal of Computing Academic Research (IJCAR), 5(3), 170-176.
27. Sharma, Pradeep, Tiwari, Ratan, Saharan, M.S., Sharma, Indu, Kumar, Jitender, Mishra, Shefali, Muthusamy, Senthilkumar K., Gupta, R.K., Jaiswal, Sarika, Iquebal, Mir Asif, Angadi, U.B., Kumar, Neeraj, Fatma, Samar, Rai, Anil, Kumar, Dinesh (2016) Draft Genome Sequence of the Karnal Bunt fungus, Tilletia indica Mitra: Two monosporidial lines (PSWKBGH-1 and 2). Genome Announcement 4(5):e00928-16. doi:10.1128/genomeA.00928-16.
28. Kaur, Sukhdeep, Iquebal, M.A., Jaiswal, Sarika, Tandon, Gitanjali, Sundaram, R.M., Gautam, R.K., Suresh, K.P., Rai, Anil and Kumar Dinesh (2016). A meta-analysis of potential candidate genes associated with salinity stress tolerance in rice. Agrigene 1, 126-134.
29. Shukla, Shantanu Shukla, Iquebal, MA, Jaiswal, Sarika, Angadi, UB, Fatma, Samar, Kumar, Neeraj, Jasrotia, Rahul S, Fatima, Yasmin, Rai, Anil, Kumar, Dinesh (2016) The Onion Genomic Resource: A Genomics and Bioinformatics driven resource for onion breeding. Plant Gene, 8: 9-15.
30. Kumar, S., Ambreen, H., Variath, M.T., Rao, A.R., Agarwal, M., Kumar, A., Goel, S. and Jagannath, A.(2016). Utilization of molecular, phenotypic, and geographical diversity to develop compact composite core collection in the oilseed crop, safflower (Carthamus tinctorius L.) through maximization strategy. Frontiers in Plant Science, 7:1554, DOI:10.3389/fpls.2016.01554.
31. Angadi, U. B., Anandan, S., Gowda, N. K. S., Rajendran, D., Devi, L., Elangovan, A. V. and Jash, S. (2016) Feed Assist-An Expert System on Balanced Feeding for Dairy Animals, AGRIS on-line Papers in Economics and Informatics, 8(3), 3 - 12.
32. Shinde, M.P., Upadhyay, A., Sarika, Iquebal, M.A. and Upadhyay, A. K. (2016). Identification, characterization and expression analysis of ERF transcription factor VviERF073 and standardization of stable reference genes under salt stress in grape. Vitis-Journal of Grapevine Research, 55, 165-171.
33. Ngaki MN, Wang B, Sahu BB, Srivastava SK, Farooqi MS, Kambakam S, etal. (2016) Tanscriptomic Study of the Soybean-Fusarium virguliforme Interaction Revealed a Novel Ankyrin-Repeat Containing Defense Gene, Expression of Whose during Infection Led to Enhanced Resistance to the Fungal Pathogen in Transgenic Soybean Plants. PLoS ONE 11(10): e0163106. doi:10.1371/journal.pone.0163106
34. Aarti Singh, Anu Sharma (2016). An Approach for Personalized Web Information Retrieval using Modified PageRank Method, Proceedings of the International Conference on Advances in Information Communication Technology & Computing, Article No. 102, ACM.
35. Iquebal, M.A., Prajneshu, Sarika (2016). Application of data reduction technique in agriculture: A functional approach. International Journal of Agricultural and Statistical Sciences, 12(S1), 209-213.
36. Das S, Meher PK, Rai A, Bhar LM, Mandal BN (2017) Statistical Approaches for Gene Selection, Hub Gene Identification and Module Interaction in Gene Co-Expression Network Analysis: An Application to Aluminum Stress in Soybean (Glycine max L.). PLoS ONE 12(1): e0169605. doi:10.1371/journal.pone.0169605.

National Journals

1. Singh, Nagendra K, Mahato, Ajay K,Jayaswal, Pawan K, Singh, Akshay, Singh, Sangeeta, Singh, Nisha, Rai, Vandna, Amitha Mithra S V, Gaikwad, Kishor, Sharma, Nimisha, Lal, Shiv, Srivastava, Manish, Praksh, Jai, Kalidindi, Usha, Singh, Sanjay K, Singh, Anand K, Khan, Kasim, Mishra, Rupesh K, Rajan, Shailendra, Bajpai, Anju, Sandhya, BS, Nischita, Puttaraju, Ravishankar, KV, Dinesh, MR, Kumar, Neeraj, Jaiswal, Jaiswal, Sarika, Iquebal, Mir A, Kumar, Dinesh, Rai, Anil and Sharma, Tilak R (2016). Origin, Diversity and Genome Sequence of Mango (Mangifera indica L.). Indian Journal of History of Science, 51.2.2 (2016) 355-368].
2. Choudhary, R.K., Rao A. R., Wahi, S.D. and Misra, A.K. (2016). Detection of biennial rhythm and estimation of repeatability in mango (Mangifera indica L.). Indian Journal of Genetics and Plant Breeding. 76(1), 88-97.
3. Singh, Binay K., Mishra, Dwijesh C., Yadav, Sushma, Ambawat, Supriya, Vaidya, Era, Tribhuvan, Kishor U., Kumar, Arun, Kumar, Sujith, Kumar, Sanjeev, Chaturvedi, K. K., Rani, Reema, Yadav, Prashant, Rai, Anil, Rai, P. K., Singh, V. V. and Singh, Dhiraj. (2016). Identification, characterization, validation and cross-species amplification of genic-SSRs in Indian Mustard (Brassica juncea). Journal of Plant Biochemistry and Biotechnology. PP. 1-11.
4. Mallikarjuna, M.G., Nepolean, T., Mittal, S., Hossain, F., Bhat, J.S., Manjaiah, K.M., Marla, S.S., Mithra, A.C., Agrawal, P.K., Rao, A.R. and Gupta, H.S. (2016). In-silico characterization and comparative mapping of yellow stripe like transporters in five grass species. Indian Journal of Agricultural Sciences, 86(5), 621-627.
5. Meher, P.K., Sahu, T.K. and Rao, A. R. (2016). Performance evaluation of neural network, support vector machine and random forest for prediction of donor splice sites in rice. Indian Journal of Genetics and Plant Breeding, 76(2), 173-180.
6. Arpan Bhowmik, Ramasubramanian V., Anil Rai, Adarsh Kumar and Madan Gopal Kundu (2016). Improved Estimation in Logistic Regression through Quadratic Bootstrap Approach: An Application in Agricultural Ergonomics.Journal of the Indian Society of Agricultural Statistics70(3) 2016 227–235