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Dasgupta, U., Mishra, G.P., Dikshit, H.K., Mishra, D.C., Bosamia, T., Roy, A., Priti, Aski, M., Kumar, R.R., Singh, A.K., Kumar, A., S, S.K., Chaurasia, S., Praveen, S., Nair, R.M. and Bhati J. Comparative RNA-Seq analysis unfolds a complex regulatory network imparting yellow mosaic disease resistance in mungbean. PLOSE ONE. https://doi.org/10.1371/journal.pone.0244593.
Kushwaha, B., Pandey, M., Das, P., Joshi, C.G., Nagpure, N.S., Kumar, R., Kumar, D., Agarwal, S., Srivastava, S., Singh, M., Sahoo, L., Jayasankar, P., Meher, P.K., Shah, T. M., Hinsu, A.T., Patel, N., Koringa, P.G., Das, S.P., Patnaik, S., Bit, A., Iquebal, Mir A., Jaiswal, S. and Jena, J. (2021) The genome of walking catfish Clarias magur (Hamilton, 1822) unveils the genetic basis that may have facilitated the development of environmental and terrestrial adaptation systems in air-breathing catfishes. DNA Research. (https://doi.org/10.1093/dnares/dsaa031).
Tiwari, J.K., Rawat, S., Luthra, S.K., Zinta, R., Sahu, S., Varshney, S., Kumar, V., Dalamu,D., Mandadi, N., Kumar, M., Chakrabarti, S.K., Rao, A.R, and Rai, A. Genome sequence analysis provides insights on genomic variation and late blight resistance genes in potato somatic hybrid (parents and progeny), Molecular Biology Report, 1-13.
George, J.K., Shelvy, S., Fayad, M., Shabeer, Ahammed T.P., Umadevi P, Kale, Rajaram, Angadi, U.B., Iquebal, M.A., Jaiswal, S., Rai, A., Kumar, D.(2021). Insilico assisted identification of peppery aroma compound ‘rotundone’ backbone genes from black pepper. Journal of Bimolecular Structure and Dynamics (https://www.tandfonline.com/doi/full/10.1080/07391102.2021.1883113)
Kumar, R.R., Dubey, K., Arora, K., Dalal, M., Rai, G.K., Mishra, D.C, Chaturvedi, K.K., Rai, A., Kumar, S.N., Singh, B., Viswanathan, C., Praveen, S., (2021). Characterizing the putative mitogen-activated protein kinase (MAPK) and their protective role in oxidative stress tolerance and carbon assimilation in wheat under terminal heat stress, Biotechnology Reports (29), DOI: https://doi.org/10.1016/j.btre.2021.e00597
Kumar, V., Jain, P., Venkadesan, S., Karkute, S.G., Bhati, J., Abdin, M.Z., Mithra, S.A.V, Mishra, D.C.,Chaturvedi, K.K., Rai, A., Sharma, T.R., Solanke, A.U. (2021). Understanding rice-Magnaporthe oryzae interaction in resistant and susceptible cultivars of rice under panicle blast infection using a time-course transcriptome analysis. Genes, 12(301). DOI: https://doi.org/10.3390/genes12020301
Pandey, A.K., Mishra, V.K., Chand, R., Navathe, S., Budhlakoti, N., Srinivasa, J., Sharma, S. and Joshi, A.K., 2021. Crosses with spelt improve tolerance of South Asian spring wheat to spot blotch, terminal heat stress, and their combination. Scientific reports, 11(1), pp.1-12. | https://doi.org/10.1038/s41598-021-85238-x
Mann, A., Kumar,N., Kumar, A., Lata, C., Kumar, A., Meena, B. L., Mishra, D., Grover, M., Gaba, S., Parameswaran, C., & Mantri, N., (2021) de novo transcriptomic profiling of differentially expressed genes in grass halophyte Urochondra setulosa under high salinity Scientific Reports. (2021) 11:5548 | https://doi.org/10.1038/s41598-021-85220-7
Farooqi, M.S., Kumar, D., Mishra, D.C., Rai, A. and Singh, N.K. (2021) ‘A hybrid method for differentially expressed genes identification and ranking from RNA-Seq data’, Int. J. Bioinformatics Research and Applications, Vol. 17, No. 1, pp.38–52 | https://doi.org/10.1504/IJBRA.2021.113964
O'Brien S., Fiechter, C. Burton, J., Hallion, J. Paas, M., Patel, Ankur, Patel, Ajay, Rochet, A., Scheurlen, K., Gardner, S., Eichenberger, M., Sarojini, S., Srivastava, S., Rai, S.N., Kalbfleisch, T., Polk, H.J. and Galandiuk, S. (2021). Long non-coding RNA ZFAS1 is a major regulator of epithelial-mesenchymal transition through miR-200/ZEB1/E-cadherin, Vimentin signaling in colon adenocarcinoma. Cell Death Discovery, 7, 61. | https://doi.org/10.1038/s41420-021-00427-x
Angadi,U. B., Animut, G., Anandan, S., Blümmel, M., Moyo, S., Rahman, H., Jones, C. (2021). FeedBase Ethiopia: The Role of Database in Developing Livestock Feed in proceedings of India–Africa Partnerships for Food Security and Capacity Building South–South Cooperation Editors: Modi, Renu, Venkatachalam, Meera (Eds.), in series of International Political Economy Series, Springer Nature Switzerland AG | https://doi.org/10.1007/978-3-030-54112-5_6
Iquebal, M.A., Jaiswal S., Singh, B.P., Prabha, R., Jasrotia, R.S., Angadi, U.B., Singh, D.P., Gupta, V., Rai, A. and Kumar, D. (2021). Fungal genomic resources for strain identification and diversity analysis of 1900 fungal species. Journal of Fungi. | https://doi.org/10.3390/jof7040288
Jaiswal, S., Iquebal, M.A. , Angadi, U.B. , Kumar, S., Rai, A., Singh, N.K., Kumar, D,(2021) Mango Genomic Resources and Databases. In: Kole C. (eds) The Mango Genome. Compendium of Plant Genomes. Springer, Cham. Book Chapter The Mango Genome pp 219-228, | https://doi.org/10.1007/978-3-030-47829-2_13
Samal, P., Molla, K.A., Bal, A., Ray, Soham, S., Harekrushna, K., A., Sahoo, P., Behera, M., Jaiswal, S., Iquebal, M.A., Chakraborti, M.l., Behera, L., Kar, M., K., Mukherjee, A.K. (2021). Comparative transcriptome profiling reveals basis of differential sheath blight disease response in tolerant and susceptible rice genotypes. Protoplasma | https://link.springer.com/article/10.1007/s00709-021-01637-x.
Angadi, U.B., Rai, A. & Uma, G. MBFerns: classification and extraction of actionable knowledge using Multi-Branch Ferns-based Naive Bayesian classifier. Soft Comput (2021). | https://doi.org/10.1007/s00500-021-05759-5
George, J.K., Shelvy, S., Fayad, A.M. U.B Angadi,M.A. Iquebal,Sarika Jaiswal,Anil Rai,Dinesh Kumar. De novo transcriptome sequencing assisted identification of terpene synthases from black pepper (Piper nigrum) berry. Physiol Mol Biol Plants (2021). | https://doi.org/10.1007/s12298-021-00986-4
Jaiswal S, Nandi S, Iquebal M, et al. Revelation of candidate genes and molecular mechanism of reproductive seasonality in carp fish (Labeo rohita Ham) by RNA sequencing. Research Square; 2020. DOI: 10.21203/rs.3.rs-118092/v1 | https://doi.org/10.21203/rs.3.rs-118092/v1
Kumar, P., Nimbal, S., Singh, R., Budhlakoti, N., Singh, V., Mishra, D.C., Sagar and Choudhary, R.R., (2021). Identification of novel marker-trait associations for lint yield contributing traits in upland cotton (Gossypium hirsutum L.) using SSRs. Frontiers in Plant Science. 2021;12: 855 | https://doi.org/10.3389/fpls.2021.653270
O'Brien S.J., Kalbflesich T., Srivastava S., Pan J., Rai S., Petras R.E., Ronquillo N., Polk H.C. Jr, Galandiuk S. (2021). Decreased Tumoral Expression of Colon-Specific Water Channel Aquaporin 8 Is Associated With Reduced Overall Survival in Colon Adenocarcinoma. Diseases of the Colon and Rectum. | https://doi.org/10.1097/dcr.0000000000002071
Banerjee, M., Cardoso, A.F., Al-Eryani, L., Pan, J., Kalbfleisch, T.S., Srivastava, S., Rai S.N., & Christopher, J. States (2021). Dynamic alteration in miRNA and mRNA expression profiles at different stages of chronic arsenic exposure-induced carcinogenesis in a human cell culture model of skin cancer. Archives of Toxicology. | https://doi.org/10.1007/s00204-021-03084-2.
Mishra, D.C., Yadav, S., Sikka, P., Jerome, A, Paul, S.S., Rao, A.R., Budhlakoti, N., Bhati, J., Singh, K.P., Balhara, A.K., Singh, I., Rai, A., Chaturvedi, K.K.*(2021). SNPRBb: Economically important trait specific SNP Resources of buffalo (Bubalus bubalis). Conservation Genetics Resources. | https://doi.org/10.1007/s12686-021-01210-x
George, J.K., Shelvy, S., Fayad, M., Umadevi P, Angadi, U.B., Iquebal, M. A., Jaiswal, S., Rai, A., Kumar, D. (2021). Denovo transcriptome sequencing assisted identification of terpene synthases from black pepper (Piper nigrum) berry. Physiology and Molecular Biology of Plants. | https://doi.org/10.1007/s12298-021-00986-4
Jaiswal, S., Jaisri J., Kumari, J., Iquebal, M.A., Gujjar, A.K.S., Nayan, V., Angadi, U.B., Kumar, S., Kumar, R., Datta, T.K., Rai, A., Kumar, D. (2021). Genome wide prediction, mapping and development of genomic resources of Mastitis associated genes in Buffalo. Frontiers in Veterinary Sciences. | https://doi.org/10.3389/fvets.2021.593871/abstract
Kumari, S., Suroshe, S.S., Kumar, D., Budhlakoti, N. and Yana, V., 2021. Foraging behaviour of Scymnus coccivora Ayyar against cotton mealybug Phenacoccus solenopsis Tinsley. Saudi Journal of Biological Sciences. 28(7), 3799-3805
Syed, Mudasir Ahmad, Bhat, Basharat Ahmad, Bhat, Shakil Ahmad, Yaseen, Mifftha, Shabir, Mir, Raza, Mustafa, Iquebal, Mir Asif, Shah, Riaz Ahmad and Ganai, Nazir A. (2021) SNPs in mammary gland epithelial cells unravelling potential difference in milk production between Jersey and Kashmiri cattle using RNA sequencing. Frontiers in Genetics. (https://www.frontiersin.org/articles/10.3389/fgene.2021.666015/full).
Singh Devendra K., Pandey Avinash, Choudhary Shashi Bhushan, Kumar Sudhir, Tribhuvan Kishor U., Mishra Dwijesh C., Bhati Jyotika, Kumar Madan, Tomar J.B., Bishnoi S. K., Mallick M.A., Bhadana V.P. , Sharma T.R., Pattanayak A., Singh Binay K., (2021). Development of genic-SSR markers and their application in revealing genetic diversity and population structure in an Eastern and North-Eastern Indian collection of Jack (Artocarpus heterophyllus Lam.) Ecological Indicators. Volume 131, 108143. https://doi.org/10.1016/j.ecolind.2021.108143.
Sarwalia, P., Raza, M., Soni, A., Dubey, P. , Kumar, R., Kumaresan, A., Onteru, S. K., Singh, K., Iquebal, M. A., Jaiswal, S., Pal, A.,Kumar, D., Datta, T.K.(2021) Establishment of the repertoire for placentome associated microRNA and their appearance in blood plasma could identify early establishment of pregnancy in buffalo (Bubalus bubalis). Frontiers in Cell and Developmental Biology, (https://www.frontiersin.org/articles/10.3389/fcell.2021.673765/full
Mishra P., Tondon G., Kumar M., Paital B., Swain S.S., Kumar S. and Samanta L. (2021) Promoter sequence interaction and structure based multi-targeted (redox regulatory genes) molecular docking analysis of vitamin E and curcumin in T4 induced oxidative stress model using H9C2 cardiac cell line. J Biomol Struct Dyn. 31:1-20. | https://doi.org/10.1080/07391102.2021.1970624
Kumar A., Mishra D.C., Angadi U.B., Yadav R., Rai A., Kumar D. Inhibition Potencies of Phytochemicals Derived from Sesame Against SARS-CoV-2 Main Protease: A Molecular Docking and Simulation Study. Front Chem. 2021;9:744376. Published 2021 Oct 8. | https://doi.org/10.3389/fchem.2021.744376
Kumar, P., Nimbal, S., Budhlakoti, N., Singh, V., & Sangwan, R. S. (2021). Genetic diversity and population structure analysis for morphological traits in upland cotton (Gossypium hirsutum L.). Journal of Applied Genetics, 1-15. | https://doi.org/10.1007/s13353-021-00667-8
Jin, J., Wahlang, B. , Thapa, M., Head, K.Z., Hardesty, J.E. , Srivastava, S. , Merchant, M.L. , Rai, S.N., Prough, R.A., and Cave, M.C.(2021). Proteomics and Metabolic Phenotyping Define Principal Roles for the Aryl Hydrocarbon Receptor in Mouse Liver, Acta Pharmaceutica Sinica B. https://doi.org/10.1016/j.apsb.2021.10.014
Rakshita, K.N., Singh, S., Verma, Veerender K., Sharma, B.B., Saini, N., Iquebal, M. A., Sharma, A., Kumar, S., Behera, T.K. (2021). Understanding population structure and detection of QTLs for curding related traits in Indian cauliflower by Genotyping by Sequencing Analysis. Functional and Integrative Genomics. (https://link.springer.com/article/10.1007%2Fs10142-021-00811-x)
Sarkar, C. , Parsad, R. , Mishra, D.C. , and Rai, A. "A Web Tool for Consensus Gene Regulatory Network Construction." Frontiers in Genetics (2021):2194. https://doi.org/10.3389/fgene.2021.745827
Banerjee, M., Al-Eryani, L., Srivastava, S., Rai, S.N. , Pan, J., Kalbfleisch, T.S., States, J.C. Delineating the Effects of Passaging and Exposure in a Longitudinal Study of Arsenic-Induced Squamous Cell Carcinoma in a HaCaT Cell Line Model. Toxicol Sci. 2021 Nov 3:kfab129. doi: 10.1093/toxsci/kfab129. Epub ahead of print. PMID: 34730829.
Iquebal, M.A., Passari, Ajit Kumar, Jaisri J, Ahmad, Farzana, Deka, Pubajyoti, Jaiswal, Sarika, Rai, A., Kumar, D., Singh, B.P., (2021). Microbiome of Pukzing Cave in India shows high antimicrobial activity against plant and animal pathogens. Genomics (https://www.sciencedirect.com/science/article/pii/S0888754321003670).
Iquebal, M.A., Mishra, P., Maurya, R., Jaiswal, S., Rai, A. and Kumar, D. (2021) Centenary of Soil and Air borne wheat Karnal bunt disease research: A Review. MDPI Biology, 10(11), 1152. https://www.mdpi.com/2079-7737/10/11/1152
Turabe F. MHU, Chirumamilla C.S., Novo C.P., Wong BHS, Kumar S, KwanSze S, Berghe WV, Verma NK (2021) The steroidal lactone withaferin A impedes T-cell motility by inhibiting the kinase ZAP70 and subsequent kinome signalling, Journal of Biological Chemistry; 3;297(6):101377; doi: 10.1016/j.jbc.2021.101377.
Varshney, N., Tauqueer A., Rai, A., Biswas, A., and Sahoo, P.M. (2021). Prediction approach estimator using auxiliary information under two-phase sampling. Int. J. Agricult. Stat. Sci. Vol. 17, No. 2, pp. 733-739, 2021
Rakshita K.N., Singh, S., Verma, V. K., Sharma, B.B., Saini, N., Iquebal, M.A., Sharma, A., Kumar, S., Behera, T.K. (2020). Agro-morphological and molecular diversity in different maturity groups of Indian cauliflower (Brassica oleracea var. botrytis L.). Plos One. (https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0260246)
Sharma, N.K., Mishra, D.C., Farooqi, Md. S., Budhlakoti, N., Chaturvedi, K.K., Das, S., Kumar, A. and Rai, A., (2021). Algorithm for selection of informative genes using gene expression data. International Journal of Agricultural and Statistical Sciences. https://connectjournals.com/03899.2021.17.2419
Jha, Y., Dehury, B., Kumar, S.P.J., Chaurasia, A., Singh, U.B., Yadav, M.K., Angadi, U.B., Ranjan, R., Tripathy, M., Subramanian, R.B., Kumar, S., Simal-Gandara, J. Delineation of molecular interactions of plant growth promoting bacteria induced β-1,3-glucanases and guanosine triphosphate ligand for antifungal response in rice: a molecular dynamics approach. Mol Biol Rep. 2021 Dec 16. doi: https://doi.org/10.1007/s11033-021-07059-5.
Haque, Md.A., Marwaha, S., Arora, A., Paul, R.K., Hooda, K.S., Sharma, A. and Grover, M. (2021).Image-based identification of maydis leaf blight disease of maize (Zea mays) using deep learning. Indian Journal of Agricultural Sciences. 91(9), 1362-1367 https://krishi.icar.gov.in/jspui/bitstream/123456789/66208/1/MLB_IJAS_2021.pdf
Deo, Man Mohan, De, Dipankar, Mani, Indra, Iquebal, Mir Asif (2021) Design and evaluation of vertical cup metering mechanism for urea briquette application. Indian Journal of Agricultural Sciences, 91(3), 359-363.
Sarkar Chiranjib, Parsad Rajender, Mishra Dwijesh Chandra, Rai Anil. An ensemble approach for gene regulatory network study in rice blast. Journal of Crop and Weed. Volume 16(3). Page 1-8.
Kumar, P., Malik, R., Tikle, A. N., Budhlakoti, N., & Verma, R. P. S. (2021). Microsatellite markers based association mapping for yield contributing traits in exotic barley (Hordeum vulgare) accessions from ICARDA. Indian J. Genet, 81, 3.
Singh, N., Rawal, H.C., Angadi, U.B., Sharma, T.R., Singh, N.K., Mondal, T.K. A first-generation Haplotype map (HapMap-1) of tea (Camellia sinensis L. O. Kuntz). Bioinformatics. 2021 Oct 2:btab690. https://doi.org/10.1093/bioinformatics/btab690.
Chandra,D.C., Budhlakoti, N., Majumdar, S.G. and Rai, A. Innovations in Genomic Selection: Statistical Perspective. Special Proceedings: ISBN #: 978-81-950383-0-5 23rd Annual Conference, 24-28 February 2021; pp 101-111.
Afroz, S., Singh, R., Nain,M.S., Mishra, J.R., Kumar, P., Khan, S.A., Iquebal, M. A. (2021). SWOT- analytic hierarchy process (AHP) of Agriclinics and Agribusiness Center (ACABC) scheme. Indian Journal of Agricultural Sciences, 91(6), 900-904. http://krishi.icar.gov.in/jspui/handle/123456789/70243
Ahmed, B., Rai, A., Iquebal, M.A., Jaiswal, S., (2021). Comparative analysis of machine learning and deep learning-based classification for abiotic stress genes of poaceae family crops. Indian Journal of Agricultural Sciences, 91(6): 861-866. http://krishi.icar.gov.in/jspui/handle/123456789/70372
Mann, A., Kumar, N., Kumar, A., Lata, C., Kumar, A., Meena, B.L., Gaba, S., Grover, M. (2021) De novo transcriptomic data of salt tolerant halophytes Dichnathium annulatum (Forssk.) Stapf and Urochondra setulosa (Trin.) C.E.Hubb, Data Brief 2021 Nov 1;39:107536. doi: 10.1016/j.dib.2021.107536.
Mishra, G.P., Aski, M.S., Bosamia, T., Chaurasia, S., Mishra, D.C., Bhati, J., Kumar, A., Javeria, S., Tripathi, K., Kohli, M., Kumar, R.R., Singh, A.K., Devi, J., Kumar, S., Dikshit, H.K. (2021). Insights Into the Host-Pathogen Interaction Pathways Through RNA-Seq Analysis of Lens culinaris Medik. in Response to Rhizoctonia bataticola Infection. Genes, 13, 90. https://doi.org/10.3390/genes13010090.
Kumar, N., Bharadwaj, C., Sahu, S. et al. Genome-wide identification and functional prediction of salt- stress related long non-coding RNAs (lncRNAs) in chickpea (Cicer arietinum L.). Physiol Mol Biol Plants (2021). https://doi.org/10.1007/s12298-021-01093-0.
Kumar, V., Sharma, A., Lal, S.B., Chaturvedi, K.K., Farooqi, M.S., Mishra, D.C., Sonkusale, L., and Kumar, R. (2022) Comparative analysis of genome browser for visualization of genetic variants. The Pharma Innovation Journal 2022; SP-11(3): 384-388
Kumar, S., Bhati, J., Saha Arijit, Lal, S.B., Pandey Pankaj Kumar, Mishra, D. C., Farooqi, Md. S., Kumar Anuj, Chaturvedi, K.K., Rai, A. (2022). CerealESTDb: A comprehensive resource for abiotic stress responsive annotated ESTs with predicted genes, gene ontology and metabolic pathways in major cereal crops. Frontiers in Genetics, section Plant Genomics. doi: 10.3389/fgene.2022.842868.
Karkute, S.G., Kumar, V., Tasleem, M., Mishra, D.C., Chaturvedi, K.K., Rai, A., Sevanthi, A. M., Gaikwad, K., Sharma, T.R., Solanke, A.U. (2022). Genome-Wide Analysis of von Willebrand Factor A (vWA) Gene Family in Rice for Its Role in Imparting Biotic Stress Resistance with Emphasis on Rice Blast Disease. Rice Science. Vol 29. http://krishi.icar.gov.in/jspui/handle/123456789/71532
Mishra, D. C., Arora, D., Budhlakoti, N., Solanke, A. U., Mithra, S., Kumar, A., Pandey, P. S., Srivastava, S., Kumar, S., Farooqi, M. S., Lal, S. B., Rai, A., & Chaturvedi, K. K. (2022). Identification of Potential Cytokinin Responsive Key Genes in Rice Treated With Trans-Zeatin Through Systems Biology Approach. Frontiers in genetics, 12, 780599. https://doi.org/10.3389/fgene.2021.780599. http://krishi.icar.gov.in/jspui/handle/123456789/71625.
Mishra, D.C., Arora, D., Kumar, R.R., Goswami, S., Varshney, S., Budhlakoti, N., Kumar, S., Chaturvedi, K.K., Sharma, A., Chinnusamy, V. and Rai, A. (2021). Weighted gene co-expression analysis for identification of key genes regulating heat stress in wheat. Cereal Research Communications, 49(1), 73-81.
Singh, A.K., Verma, S.K., Mittal, S., C. Gayacharan, Wankhede, D.P., Parida, S., Kumar, C.D., Prasad, G., Mishra, D.C., Joshi, D.C., Singh, M., Singh, K. (2022). Transcriptome analysis reveals key pathways and candidate genes controlling seed development and size in ricebean (Vigna umbellata). Frontiers in Genetics, section Plant Genomics. https://doi.org/10.3389/fgene.2021.791355.
Thakur A. K., Singh K. H., Sharma, D., Parmar, N., Mishra D. C., Singh, L., Nanjundan, J. (2022). Enriching the repertoire of SSR markers of Ethiopian mustard using cross-transferability approach. Plant Physiol. Rep. https://doi.org/10.1007/s40502-021-00639-4.
Tripathi, K., Kumari, J., Gore, P.G., Mishra, D.C., Singh, A.K., Mishra, G.P., C Gayacharan, Dikshit H.K., Singh, N., Semwal, D.P., Mehra, R., Bhardwaj, R., Bansal, R., Rana, J.C., Kumar, A., Gupta, V., Singh, K., Sarker, A.. (2022). Agromorphological characterization of lentil germplasm of Indian National Genebank and development of a core set for efficient utilization in lentil improvement programs. Frontiers in Plant Science, section Plant Breeding. https://doi.org/10.3389/fpls.2021.751429.
Yadav, M.K., Ahmad, S., Raza, K., Kumar, S., Eswaran, M., Pasha, Km.M (2021) Predictive modeling and therapeutic repurposing of natural compounds against the receptor-binding domain of SARS-CoV-2. J Biomol Struct Dyn. 2022, 1-13. ) http://krishi.icar.gov.in/jspui/handle/123456789/72346

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