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>DQ296476.1 0787 Abutilon theophrasti library (Dauch AL) Abutilon theophrasti cDNA, mRNA sequence CGATGTATAGGAAGCACATAAGAAGGACATTGCCCAAGAAGCTGTTAAGAAGAGAAGACGCACCACCAAAAAGCCTTATT CTCGATCCATTGTTGGTGCCACCTTAGAGGTTATCCAGAAGAAGAGGAGTGAGAAACCCGAAGTTCGTGATGCTGCCAGG GAAGCTGCTCTCAGAGAAATCAAGGAAAGAATCAAGAAAACCAAGGATGAAAAAAAGGCGAAGAAAGCCGAAGTAGCAGC AAAGCAACAGAAGACAGGGGGCAAGGGTAACATTCCAAAGGGTTCTGCACCGAAAGGTCCCAAGATCGGTGGTGGCGGCG GCAAGCGTTGAGTTGCTAAGTTATCTGTTTTTCTTTAACCGGAGAAATAGAGTTAGTATGTTAATTTTTGAAGTTATTTT ATGGACTTAAATGGCATTTGTAGCCATGTTTTGCATTTATGTTTATTCTATACTATGAAACTCTGTTAAAGTTGAGTGAT CAAGTAATTTTATGGATTTTAAAAAAAAAAAAAAAAAA >DQ296475.1 0661 Abutilon theophrasti library (Dauch AL) Abutilon theophrasti cDNA, mRNA sequence AACGAGCGGAGAGATAAAGAAGCCAGCAGCTCAGCGGCCACAGAGCAGTCTTTTGACGCCATGGGTAAGGTTCACGGATC TTTAGCACGTGCCGGTAAGGTGAGAGGCCAAACACCTAAAGTGGCAAAGCAAGACAAGAAGAAGAAGCCCCGAGGCCGCG CTCACAAGAGGATGCAATACAACCGCCGCTTCGTCACCGCAGTGGTTGGATTTGGCAAAAAGAGGGGTCCTAACTCATCT GAGAAGTGAGAGATCTCTATGTAGTTGAAGGCAAGATGCCTTGTTGCAAGCTTTGATGGATTTTAAGTTCTTGTTTCCTT CTGAAAATGTTTTTATGATACTTACTTTTAGCTACTGGTTTCAAGGATTGGATTGAACTTTCGTTTTGTTTACTAGAGAT TATGTGATTGTCATCAATTATCGTAAAAAAAAAAAAAAAAAAAAAAAA >X87171.1 A.hypochondriacus mRNA for ribulose-1,5-bisphosphate carboxylase/oxygenase CATACATATAACTCAACTTTGGGAAGCCAACAAGTACACTAATAACAATGGCTTCCTCTATGCTTTCCAACGCCGCCATG GCCACCACCGCCGCCACCGCCGGTGCTCAAGCTAGCATGGTGGCTCCCTTTAATGGGTTGAAATCTTTTGCTACTTTTCC TATCACTAAGAAGTCTAGCAATGACTTCTCTTCCCTTCCTTCCAATGGCGGAAGAGTCCAATGCATGCAGGTATGGCCAC CAGTTGGTAAGAAGAAGTTTGAGACCTTGTCTTACCTTCCACCTCTAAGTGACGCACAATTGTTGGCTCAAGTTCAATAC CTTCTCAACAAGGGATGGATTCCTTGCATTGAATTCGAGTTGGAACACCCATTTGTTTACCGTGAGAACCACAGGTCACC AGGATACCAAGATGGACGTTACTGGACTATGTGGAAGTTGCCCATGTACGGATGCACTGACCCCGCCCAGGTGTTGAACG AGGTTGAGGAAGCCAAGAAGGCTTACCCAAGCGCCTTCATCAGAATCATTGGATTCGACAATAAACGTCAAGTGCAATGC GTCAGTTTCATTGCTTACAAGCCTGCTGGCGGCCTCTAAGTTGTTTTTAACATTTTTTCGTGCAATTTCATTCTATTTTT GAATTCTATATGTATTTATTCAAGAGATTTCTTCTTTGAATATCCTTAAGAAAAACATAATATTAAAAATGTGTTTTATT TGGCGTGTAAAAAAAAAAAAAAAAA >Amaranthus tuberculatus_GenBank FJ869880 ATGGCTCAAGCTACTACCATCAACAATGGTGTCCAAACTGGTCAATTGCACCATACTTTACCCAAAACCCACTTGCCCAA ATCTTCAAAAATTGTTAATTTTGGATCAAACTTGAGAATTTCTCCAAAGTTCATGTCTTTAACCAATAAAAGAGTTGGTG GGCAATCATCAATTATTCCCAAGATTCAAGCTTCAGTTGCTGCTGCAGCTGAGAAGCCTTCATCTGTCCCAGAAATTGTG TTACAACCCATCAAAGAGATCTCTGGTACCATTCAATTGCCTGGGTCAAAGTCTCTATCTAATCGAATCCTTCTTTTAGC TGCTTTGTCTCAGGGCACAACTGTGGTCGACAACTTGCTGTATAGTGATGATATTCTTTATATGTTGGACGCTCTCAGAA CTCTTGGTTTAAAAGTGGAGGATGATAATACAGACAAAAGGGCAGTCGTGGAGGGTTGTGGTGGTCTGTTTCCTGTTGGT AAAGATGGAAAGGAAGAGATTCAACTTTTCCTTGGAAATGCAGGAACAGCGATGCGCCCATTGACAGCTGCGGTTGCCGT TGCTGGAGGAAATTCAAGCTATGTTCTTGACGGAGTACCAAGAATGAGGGAGCGCCCCATTGGGGATCTGGTAGCAGGTC TAAAGCAACTTGGTTCAGATGTTGACTGTTTTCTTGGCACAAATTGCCCTCCTGTTCGGGTCAATGCTAAAGGAGGCCTT CCAGGGGGCAAGGTCAAGCTCTCTGGATCGGTTAGTAGCCAATATTTAACTGCACTTCTGATGGCTACTCCTTTGGGTCT TGGAGATGTGGAGATTGAGATAGTTGATAAATTGATTTCCGTACCGTATGTTGAAATGACAATAAGGTTGATGGAACGCT TTGGAGTATCTGTTGAACATAGTGATAGTTGGGACAGGTTCTTCATCCGAGGTGGTCAAAAATACAAATCTCCTGGAAAG GCATATGTTGAGGGTGACGCTTCAAGTGCTAGCTACTTCCTAGCTGGAGCTGCCGTCACTGGGGGGACTGTGACTGTCAA GGGTTGTGGAACAAGCAGTTTACAGGGTGATGTAAAATTTGCCGAAGTTCTTGAGAAGATGGGTTGCACGGTCACCTGGA CAGAGAATAGCGTAACTGTTACTGGACCACCCAGGGAATCATCTGGAAGGAAACATTTGCGCGCTATCGACGTCAACATG AATAAAATGCCAGATGTTGCTATGACTCTTGCAGTTGTTGCCTTGTATGCAGATGGGCCCACCGCCATCAGAGATGTGGC TAGCTGGAGAGTGAAGGAAACCGAACGGATGATTGCCATTTGCACAGAACTGAGAAAGCTTGGGGCAACAGTTGAGGAAG GATCTGATTACTGTGTGATCACTCCGCCTGAAAAGCTAAATCCCACCGCCATTGAAACTTATGACGATCACCGAATGGCC ATGGCATTCTCTCTTGCTGCCTGTGCTGATGTTCCCGTCACTATCCTTGATCCGGGATGTACACGTAAAACCTTCCCGGA CTACTTTGATGTCTTAGAAAAGTTCGCCAAGCATTGA >Amaranthus viridis_US Patent 20130288895 ATGGCTCAAGCTACTACCATCAACAATGGTGTCCAAACTGGTCAATTGCACCATATTTTACCCAAAACCCACTTACCCAA ATCTTCAAAAACTCTTAATTTTGGATCAAACTTGAGAATTTCTCCAAAGTTCATGTCTTTGACCAATAAAAGAGTTGGTG GGCAATCATCAATTGTTCCCAAGATTCAAGCTTCTGTTGCTGCTGCAGCTGAGAAGCCTTCATCTGTCCCAGAAATTGTT TTACAACCCATCAAAGAGATCTCTGGTACTGTTCAATTGCCTGGGTCAAAGTCTTTATCCAATCGAATCCTTCTTTTAGC TGCTTTGTCTGAGGGCACAACAGTGGTCGACAACTTGCTGTATAGTGATGATATTCTTTATATGTTGGACGCTCTCAGAA CTCTTGGTTTAAAAGTGGAGGATGATAATACAGCCAAAAGGGCAGTCGTGGAGGGTTGTGGTGGTCTGTTTCCTGTTGGT AAAGATGGAAAGGAAGAGATTCAACTTTTCCTTGGTAATGCAGGAACAGCGATGCGCCCATTGACAGCTGCGGTTGCCGT TGCTGGAGGAAATTCTAGTTATGTGCTTGATGGAGTGCCAAGAATGAGGGAGCGCCCCATTGGGGATCTGGTAGCAGGTC TAAAGCAACTTGGTTCAGATGTTGACTGTTTTCTTGGCACAAATTGCCCTCCTGTTCGGGTTAATGCTAAAGGAGGCCTT CCAGGGGGCAAGGTCAAGCTCTCTGGATCGGTTAGTAGCCAATATTTAACTGCACTTCTCATGGCTACTCCTTTGGGTCT TGGAGACGTGGAGATTGAGATAGTTGATAAATTGATTTCTGTACCGTATGTTGAAATGACAATAAGGTTGATGGAACGCT TTGGAGTATCTGTAGAACATAGTGATAGTTGGGACAGGTTCTACATACGAGGTGGTCAAAAATACAAATCTCCTGGAAAG GCATATGTTGAGGGTGACGCTTCAAGTGCTAGCTACTTCCTAGCTGGAGCCGCCGTCACTGGTGGGACTGTGACTGTCAA GGGTTGTGGAACAAGCAGTTTACAGGGTGATGTAAAATTTGCCGAAGTTCTTGAGAAGATGGGCTGCAAGGTCACCTGGA CAGAGAATAGCGTAACTGTTACGGGACCACCCAGGGATTCATCTGGAAGGAAACATCTGCGCGCTGTCGACGTCAACATG AACAAAATGCCAGATGTTGCTATGACTCTTGCAGTAGTTGCCTTGTATGCTGATGGGCCCACTGCCATCAGAGATGTGGC TAGCTGGAGAGTGAAGGAAACCGAACGGATGATTGCCATTTGCACAGAACTGAGAAAGCTTGGGGCAACAGTTGAGGAAG GATCTGATTACTGTGTGATCACTCCGCCTGAAAAGCTAAATCCCACCGCCATCGAAACTTATGATGATCACCGAATGGCC ATGGCATTCTCTCTTGCTGCCTGTGCAGATGTTCCCGTCACTATCCTTGATCCGGGATGCACCCGTAAAACCTTCCCGGA CTACTTTGAAGTTTTAGAAAAGTTCGCCAAGCATTGA

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• dSSPred
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• HSplice
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• DCDNC
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• DIRprot

Our recent publications

Meher PK , Sahu TK , Banchariya A, Rao AR (2017). DIRProt: A computational approach for discriminating insecticide resistant proteins from non-resistant proteins. BMC Bioinformatics, 18: 190.

Meher PK , Sahu TK , Saini V, and Rao AR (2017). Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico-chemical and structural features into Chou’s general PseAAC. Scientific Reports, 7: 42362.

Meher PK , Sahu TK , Rao AR, Wahi, SD(2016). Discriminating coding from non-coding regions based on codon structure and methylation-mediated substitution: An application in rice and cattle. Computers and Electronics in Agriculture, 129: 66–73.

Meher PK , Sahu TK , Rao AR(2016). Prediction of donor splice sites using random forest with a new sequence encoding approach. BioData mining, 9:4.

Meher PK , Sahu TK , Rao AR, Wahi, SD(2016). Identification of donor splice sites using support vector machine: a computational approach based on positional, compositional and dependency features. Algorithms for Molecular Biology, 11:16.

Meher PK , Sahu TK , Rao AR, Wahi, SD(2016). A computational approach for prediction of donor splice sites with improved accuracy. Journal of Theoretical Biology, 404: 285–294.

Meher PK , Sahu TK , Rao AR(2016). Identification of species based on DNA barcode using k-mer feature vector and Random forest classifier. Gene, 592: 316–324.

Meher PK , Sahu TK , Rao AR, Wahi, SD(2015). Determination of window size and identification of suitable method for prediction of donor splice sites in rice (Oryza sativa) genome. Journal of Plant Biochemistry and Biotechnology, 24(4): 385-392.

Meher PK , Sahu TK , Rao AR, Wahi, SD(2014). A statistical approach for 5’ splice site prediction using short sequence motifs and without encoding sequence data. BMC Bioinformatics, 15: 362.