Mr. Neeraj Budhlakoti
Dr. Neeraj Budhlakoti
Scientist
neeraj.budhlakoti@icar.gov.in, neeraj35669@gmail.com
iconpdf
Citations and H index



Research Interest


  • Bioinformatics
  • Computational Biology
  • Machine Learning & Data Mining

Teaching


  • Taught Senior Certification Course, Application of Computer in Agriculture

Important Projects


  • Non Linear Modelling For Genomic Predictions Based on Multiple Traits

  • Development of an Improved Hybrid De-novo Whole Genome Assembler

  • Development of robust methods for Genomic Selection

  • Identification of defense genes/QTLs associated with stripe rust resistance in wheat

  • Structural and functional genomics of potato and its pest / pathogen using bioinformatics approaches.


Awards and Honors


  • BEST PAPER AWARD: Richa Varshney, Neeraj Budhlakoti and Chandish R Ballal (2018). Geocoris ochropterus Fieber: a potential predator. Best paper presentation award in First International conference on Biological Control: Approaches and Applications, organized at Bengaluru, India from 27-29 September, 2018.

  • BEST PAPER AWARD: Awarded 1st Prize for Hindi Research Paper entitled “टी. ए. जी. पी. टी.: जीन एक्स्प्रेसन डेटा पर आधारित ट्रेट से संबंधित जीन की पहचान के लिये वैब सर्वर” by Mishra, D.C., Budhlakoti, N., Kumar, S., Lal, S. B. and Rai, Anil presented during Hindi Pakhwada (September 01 to 14, 2018) at IASRI, New Delhi.


Training Courses/Teaching Material


  • Conducted a Training Programme entitled "Next Generation Sequencing (NGS) Data Analysis: A Practical Perspective" using R during 7-9, August, 2018 at Plant Molecular Biology and Biotechnology, IGKV, Raipur.

  • Attended National workshop on Developing a Roadmap for Agricultural Knowledge Management in India held on September 2017 at NASC complex, New Delhi.

  • Attended 3 day’s Hindi training programme entitled “कृषि में प्रतिदर्श सर्वेक्षण तकनीकों का उपयोग” from 25-27 September, 2017 at ICAR-IASRI.

  • Conducting various practical sessions using R in Training programme organized at Institute level.

  • Delivering lectures in various sponsored training programs organized at Institute level.

  • Organized a training programme “Recent Advances of Bioinformatics in Agriculture: A Practical Perspective” sponsored by HRM unit of ICAR, New Delhi from December 1 to December 21, 2017

  • Organized a 3 days training programme in Hindi entiteledजैव-सूँचना विज्ञान: एकपरिचय held at ICAR-IASRI for Scientist and technical staff from may 24, 2017 to may 26, 2017 as a course Co-Cordinator.


Important Publications


  • Kumar, P., Malik, R., Tikle, A. N., Budhlakoti, N. , & Verma, R. P. S. (2021). Microsatellite markers based association mapping for yield contributing traits in exotic barley (Hordeum vulgare) accessions from ICARDA. Indian J. Genet, 81, 3.

  • Kumari, S., Suroshe, S.S., Kumar, D., Budhlakoti, N. and Yana, V., 2021. Foraging behaviour of Scymnus coccivora Ayyar against cotton mealybug Phenacoccus solenopsis Tinsley. Saudi Journal of Biological Sciences. 28(7), 3799-3805 iconpdf

  • Mishra, D.C., Yadav, S., Sikka, P., Jerome, A, Paul, S.S., Rao, A.R., Budhlakoti, N., Bhati, J., Singh, K.P., Balhara, A.K., Singh, I., Rai, A., Chaturvedi, K.K.(2021). SNPRBb: Economically important trait specific SNP Resources of buffalo (Bubalus bubalis). Conservation Genetics Resources. iconpdf

  • Kumar, P., Nimbal, S., Singh, R., Budhlakoti, N., Singh, V., Mishra, D.C., Sagar and Choudhary, R.R., (2021). Identification of novel marker-trait associations for lint yield contributing traits in upland cotton (Gossypium hirsutum L.) using SSRs. Frontiers in Plant Science. 2021;12: 855 iconpdf

  • Pandey, A.K., Mishra, V.K., Chand, R., Navathe, S.,Budhlakoti, N., Srinivasa, J., Sharma, S. and Joshi, A.K., 2021. Crosses with spelt improve tolerance of South Asian spring wheat to spot blotch, terminal heat stress, and their combination. Scientific reports, 11(1), pp.1-12. iconpdf

  • Budhlakoti, N., Rai, A., Mishra, D.C., Jaggi, S., Kumar, M., Rao A.R.,(2020). Comparative study of different non-parametric genomic selection methods under diverse genetic architecture. Indian Journal of Genetics and Plant Breeding. 80 (4), 395-401. iconpdf

  • Anjan Kumar Pradhan, Sundeep Kumar, Amit Kumar Singh, Neeraj Budhlakoti,D.C. Mishra, Divya Chauhan, Shikha Mittal, Monendra Grover, Suneel Kumar, O.P. Gangwar, Subodh Kumar, Arun Gupta, S.C. Bhardwaj, Anil Rai, Kuldeep Singh (2020). Identification of QTLs/defense genes effective at seedling stage against prevailing races of wheat stripe rust in India. Front. Genet. 11: 572975. iconpdf

  • Rajan Veena, Mishra Dwijesh Chandra, Budhlakoti Neeraj and Kumar Sundeep (2020). Prediction and validation of protein-protein interaction using protein 3D structure and physicochemical properties by the aid of support vector machine. Biotech Today, 10 (1):12 – 14.

  • N Budhlakoti, A Rai, DC Mishra, S Jaggi, M Kumar, AR Rao Comparative study of different non-parametric genomic selection methods under diverse genetic architecture(2020) Indian Journal of Genetics and Plant Breeding 80 (4), 395-401.

  • N Budhlakoti, A Rai, DC Mishra Effect of influential observation in genomic prediction using LASSO diagnostic Indian Journal of Agricultural Sciences 90 (6), 1155-1159

  • AK Pradhan, D Kumar, AK Singh, N Budhlakoti, DC Mishra, D Chauhan, .Identification of QTLs/defense genes effective at seedling stage against prevailing races of wheat stripe rust in India

  • Singh, Shweta, Vinod Kumar Mishra, Ravindra Nath Kharwar, Neeraj Budhlakoti, Ram Narayan Ahirwar, Dwijesh Chandra Mishra, Sundeep Kumar et al. (2020). Genetic characterization for lesion mimic and other traits in relation to spot blotch resistance in spring wheat. PloS one 15: e0240029.iconpdf

  • Mishra,D.C.,Arora, D., Kumar, R.R., Goswami, S., Varshney, S., Budhlakoti, N., Kumar, S., Chaturvedi, K.K., Sharma, A., Chinnusamy, V. and Rai, A., 2020. Weighted gene co-expression analysis for identification of key genes regulating heat stress in wheat. Cereal Research Communications, pp.1-9. iconpdf

  • Anu Sharma,Dwijesh Chandra Mishra,Neeraj Budhlakoti, Anil Rai, Shashi Bhushan Lal and Sanjeev Kumar (2020). Algorithmic and computational comparison of metagenome assemblers. Indian Journal of Agricultural Sciences. 90 (5): 847–54.

  • Budhlakoti, N., Rai, A., & Mishra, D. C. (2020). Statistical Approach for improving Genomic prediction Accuracy through Efficient Diagnostic Measure of Influential Observation. Scientific Reports, 10(1), 1-11.iconpdf

  • Upadhyay, D.,Budhlakoti, N., Singh, A.K., Bansal R., Kumari j., Chaudhary N., Padaria J.C, Sareen S. & Kumar S.(2020). Drought tolerance in Triticum aestivum L. genotypes associated with enhanced antioxidative protection and declined lipid peroxidation. 3 Biotech 10, 281.iconpdf

  • Ram Narayan Ahirwar, Vinod Kumar Mishra, Dwijesh Chandra Mishra, Neeraj Budhlakoti, Shweta Singh, Ramesh Chand (2020). Biplot analysis for spot blotch and yield trait using wami panel of spring wheat. Journal of Experimental Biology and Agricultural Sciences, 8(2): 115 – 124.iconpdf

  • Richa Varshney, Neeraj Budhlakoti, Chandish R. Ballal. (2020). Functional response of three species of predatory pirate bugs to different densities of blossom thrips, Frankliniella schultzei Trybom (Thysanoptera: Thripidae). Current Science, 118(5) 827-833..iconpdf

  • Renu, Sanjay Kumar Gupta, Ashutosh Kumar Rai, Khan Mohammad Sarim, Anu Sharma, Neeraj Budhlakoti, Devendra Arora, Dhiraj Kumar Verma , Dhananjaya P.Singh (2019). Metaproteomic data of maize rhizosphere for deciphering functional diversity. iconpdf

  • Budhlakoti Neeraj, Mishra Dwijesh Chandra, Rai Anil, Lal S. B., Chaturvedi Krishna Kumar, Kumar Rajeev Ranjan (2019). A Comparative Study of Single Trait and Multi-Trait Genomic Selection. Journal of Computational Biology. Vol 26, pg 1-13.iconpdf

  • Arun Joshi, Uttam Kumar, Vinod Kumar Mishra, Ramesh Chand, Ravish Chatrath, Rudra Naik, Suma Suresh Biradar, Ravi Singh, Neeraj Budhlakoti, Ravi D, Michael Blummel (2019). Variations in straw fodder quality and grain–straw relationships in a mapping population of 287 diverse spring wheat lines. Field Crops Research, 243(2019) 107627. iconpdf

  • Neeraj Budhlakoti,, Ravi Shankar, Anil Rai, Rajeev Ranjan Kumar, A R Rao (2019). Microarray data expression study for better identification of differentially expressed genes. Journal of the Indian Society of Agricultural Statistics. 73(3):251-255.

  • Neeraj Budhlakoti, D.C. Mishra, Devendra Arora and Rajeev Ranjan Kumar (2018). Application of genomic selection in agriculture. Bhartiya Krishi Anushandhan Patrika, 33(4): 295-297.

  • Ahirwar Ram Narayan, Mishra Vinod Kumar, Chand Ramesh, Budhlakoti Neeraj, Mishra Dwijesh Chandra, Kumar Sundeep, Singh Shweta, Joshi Arun Kumar (2018). Genome-wide association mapping of spot blotch resistance in wheat association mapping initiative (WAMI) panel of spring wheat (Triticum aestivum L.). PLOS ONE. pp 1–20. iconpdf

  • Mishra Dwijesh Chandra *, Kumar Sanjeev, Lal SB, Saha Arijit,Chaturvedi KK, Budhlakoti Neeraj and Rai Anil (2018). TAGPT: A Web Server for Prediction of Trait Associated Genes using Gene Expression Data. Annals of Genetics and Genetic Disorders. 1(1): 1003.iconpdf

  • Richa Varshney, Neeraj Budhlakoti, Chandish R. Ballal. (2018). Functional response of Geocoris ochropterus Fieber (Hemiptera: Geocoridae) to different egg densities of Helicoverpa armigera (Hübner) (Lepidoptera: Noctuidae). Phytoparasitica iconpdf

  • Nalinikanta Choudhury, Sumeet Saurav, Rajeev Ranjan Kumar and Neeraj Budhlakoti (2017). Modelling and Forecasting of Total Area, Irrigated Area, Production and Productivity of Important Cereal Crops in India towards Food Security. Int.J.Curr.Microbiol.App.Sci. 6(10): 2591-2600. iconpdf


R Packages


  • RR Kumar, G Jha, N Budhlakoti R Package MSGARCHelm: Hybridization of MS-GARCH and ELM Modeliconpdf

  • RR Kumar, G Jha, DC Mishra, N Budhlakoti R Package SBAGM: Search Best ARIMA, GARCH, and MS-GARCH Modeliconpdf

  • Neeraj Budhlakoti, D C Mishra, Anil Rai and K K Chaturvedi (2019). STGS: Genomic Selection using Single Trait. R package version 0.1.0. iconpdf

  • Neeraj Budhlakoti, D C Mishra and Anil Rai (2019). MTGS: Genomic Selection using Multiple Traits. R package version 0.1.0. iconpdf

  • Nitesh Kumar Sharma, Dwijesh Chandra Mishra, Neeraj Budhlakoti and Md. Samir Farooqi (2020). IGST: Informative Gene Selection Tool. R package version 0.1.0. iconpdf

  • Neeraj Budhlakoti, D C Mishra, Anil Rai and Rajeev Ranjan Kumar (2020). OGS: Outlier in Genomics Data. iconpdf

  • Rajeev Ranjan Kumar, K N Singh, D C Mishra and Neeraj Budhlakoti (2020). EDI: Calculation of Effective Drought Index (EDI). iconpdf


Book Chapter


  • D. C. Mishra, S. B. Lal, Anu Sharma, Sanjeev Kumar, Neeraj Budhlakoti and Anil Rai (2018). "Strategies and Tools for Sequencing and Assembly of Plant Genomes". Springer publications, page no. 81-94.


ASHOKA logo Centre for Agricultural Bioinformatics
ICAR - Indian Agricultural Statistics Research Institute, Library Avenue, Pusa, New Delhi - 110012 (INDIA)
E-mail:   hd.cabin@iasri.res.in, anil.rai@icar.gov.in
Phone:   91-11-25847121-24 (PBX);   Ext:  4349, 4341
Fax:        91-11-25841564   
html templates

This site is viewed::::::times since January 2015.