Dr. Ulavappa B. Angadi
Dr. Ulavappa B. Angadi
Principal Scientist
ub.angadi@icar.gov.in, angadiub@gmail.com
Citations and H index

Research Interest

  • Computer Application
  • Bioinformatics in Agriculture
  • Soft Computing
  • Clustering and Pattern Classification

Important Projects

  • Development of statistical and computational approach for preprocessing and analyzing high-throughput proteomics data with missing values.

  • Web-based Knowledge Management System in Animal Nutrition and Physiology as PI
  • Development of Indian livestock feed portal as CO-PI
  • Refinement of livestock feed resources and development of dynamic database information system as CO-PI

  • ASRB-NAIP Online Examination as Associate
  • Clustering of Protein sequences as PI
  • District wise quantitative & quality assessment of animal feed resources and development of information system as CO-PI

  • Institute village Linkage Programme as Associate
  • Assessment and Formulation of database of feed and animal Resources availability in the country as CO-PI

  • Development of web server for phenotype and genotype analysis for cattle breeding management (Inter-Institutional Project in Collaboration with ICAR-CIRC, Meerut).

  • Computational and experimental biology approaches for delineation of selected secondary metabolite pathways and antimicrobial peptides (AMPs) in major spices (In collaboration with ICAR-IISR, Kozhikode) .

  • Genomic data analysis to elucidate the regulatory network and candidate genes underlying cytoplasmic male sterility in pigeonpea (In collaboration with ICAR-IIPR,Kanpur).

  • Computational approach for genomic resource improvement and precision phenotyping of less explored yield traits in wheat (In collaboration with ICAR-IIWBR, Karnal).

  • Development of a Tool for Comparison of Protein 3D Structure using graph theoretic approach

  • Multilabel functional classification of abiotic stress related proteins in Poaceae

  • Development of 16s rDNA rumen microbes specific database.

  • Refinement of livestock feed resources and development of Database and information system

  • Genomic data analysis for identification of economically important markers and viral diagnostics in pulses

  • Molecular and computational approach to delineate metabolic pathways for better carbohydrate utilization in Labeo spp

  • Computational approach for harnessing genome information and its integration with wheat phenome for efficient varietal development.

  • Mining and validation of candidate gene markers and screening on antimicrobial peptides of black pepper and small cardamom.

Copyright Received

Sl. No. Authors Title Year Copyright Registration Number / Country
1. Pradeep Sharma, Sonia Sheoran, Bharti Aneja, Sarika Jaiswal, G.P. Singh, Anil Rai, Vasu Arora, Dinesh Kumar, M.A. Iquebal, U.B. Angadi, Nishu Raghav, R.S. Khokar, Deepender Kumar, Ratan Tiwari TaSSRDb: Triticum aestivum SSR Database http://webtom.cabgrid.res.in/wheatssr/ 2018 SW-11115/2018 India
2. Sarika Jaiswal, M.A. Iquebal, Vasu Arora, Sonia Sheoran, P. Sharma P, U.B. Angadi, R. Singh, R. Tiwari, G.P. Singh, A. Rai, Dinesh Kumar TamiRPred: Putative miRNA Discovery and its Target Identification tool for Wheat (Triticum aestivum L.) http://webtom.cabgrid.res.in/tamirpred/index.php 2018 SW-10685/2018 India
3. C.N. Mishra, Sarika Jaiswal, N. Kumar, V. Tiwari, U.B. Angadi, A. Gupta, D. Kumar, S. Sheoran, N. Raghava, D. Kumar, A. Rai, S. Paul, M.A Iquebal, G.P. Singh, P. Sharma, R. Singh, R. Tiwari VISTa: Variety Identification System for Triticum aestivum (Wheat) software http://webtom.cabgrid.res.in/vista/ 2018 SW-10795/2018 India
4. M. A. Iquebal, Sandeep Kumar Verma, Rahul Singh Jasrotia, Sarika, U. B. Angadi, Anil Rai, Dinesh Kumar CnTDB: Coconut Transcriptome Database http://webtom.cabgrid.res.in/cntdb/ 2019 5460/2019-CO/SW
                                                                             Copyright Applied
1. M. A. Iquebal, Sarika, U. B. Angadi, Samar Fatma, Yasmin Fatima, Anil Rai, Dinesh Kumar, Abhishek Bohra, K.R. Soren, Mohd. Akram, N.P. Singh Levidb: Genomics of Virus in Legume Crops http://webtom.cabgrid.res.in/levidb/ 2019 5463/2019-CO/SW
2. Shantanu Shukla, M. A. Iquebal, Sarika, U. B. Angadi, Samar Fatma, Neeraj Kumar, Rahul Singh Jasrotia, Yasmin Fatima, Anil Rai, Dinesh Kumar OGR: The Onion Genomic Resource http://webtom.cabgrid.res.in/ogr/ 2019 5461/2019-CO/SW

Foreign Visit

  • University of Heidelberg, Heidelberg, Germany, 2009

Important Publications

  • Rasal, Kiran D.,Iquebal, Mir Asif, Dixit, Sangita, Vasam, Manohar,Jaiswal,Sarika, Sahoo, Lakshman, Jagannadham, Jaisri, Nandi, Samiran, Mahapatra, Kanta Das, Rasal, Avinash, Udit, Uday Kumar, Meher, Prem Kumar, Murmu, Khuntia, Angadi, UB, Rai, Anil, Sundaray, Jitendra Kumar and Kumar, Dinesh (2020). Revealing global transcriptional plasticity and modulation in metabolic pathways in liver of genetically improved carp, Jayanti rohu, Labeo rohita fed with high carbohydrate regime. International Journal of Molecular Sciences.iconpdf

  • Kumar, D, Kumar, A, Chhokar, V, Gangwar, O.P., Bhardwaj,S.C, Sivasamy M, Prasad,Sai, Sheoran,S.V, Singh, Sonia, Sharma, Rajender, Iquebal ,M A, Jaiswal,Sarika, U.B. Angadi, Singh,Gyanendra,Rai Anil,Singh, G.P.,Kumar, Dinesh,and Tiwari, Ratan (2020) Genome-wide association studies in diverse spring wheat panel for Stripe, Stem and Leaf rust resistance. Frontiers in Plant Science, 11, Article number 748 iconpdf

  • Deepender Kumar, Vinod Chhokar, Sonia Sheoran, Rajender Singh, Pradeep Sharma, Sarika Jaiswal, M. A. Iquebal, Akanksha Jaiswar, J. Jaisri,U.B. Angadi, Anil Rai, G. P. Singh, Dinesh Kumar, Ratan Tiwari, Characterization of genetic diversity and population structure in wheat using array based SNP markers, Mol Biol Rep (2019).iconpdf

  • Mir Asif Iquebal, Pradeep Sharma, Rahul Singh Jasrotia, Sarika Jaiswal, Amandeep Kaur, Monika Saroha, U. B. Angadi, Sonia Sheoran, Rajender Singh, G. P. Singh, Anil Rai, Ratan Tiwari & Dinesh Kumar. RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat, Scientific Reports volume 9, Article number: 13917 (2019) iconpdf

  • Samireddypalle. A, Prasad K.V.S.V., Ravi D., Khan A.A., Reddy R. U.B. Angadi, Blümmel M. Embracing whole plant optimization of rice and wheat to meet the growing demand for food and feed, Field Crops Researchiconpdf

  • U. B. Angadi, K. K. Chaturvedi, S. Srivastava and Rai Anil. "A Novel Way of Comparing Protein 3D Structure Using Graph Partitioning Approach," in IEEE/ACM Transactions on Computational Biology and Bioinformatics.iconpdf

  • Rasal, Kiran D., Iquebal, Mir Asif,Jaiswal, Sarika, Dixit, Sangita, Vasam, Manohar, Nandi, Samiran, Raza, Mustafa, Sahoo, Lakshman, Angadi, UB, Rai Anil, Kumar, Dinesh, and Sundaray, Jitendra Kumar Sundaray (2019). Liver specific microRNAs identification in farmed carp, Labeo bata (Hamilton, 1822) fed with starch diet using high-throughput sequencing. Marine Biotechnology iconpdf

  • Rasal, Kiran D., Iquebal, Mir Asif, Pandey, Amrendra, Behera, Parmeswari, Jaiswal, Sarika, Vasam, Manohar, Dixti, Sangita, Raza, Mustafa, Sahoo, L., Nandi, Samiran, Angadi, UB, Rai Anil Kumar, Dinesh Nagpure, Naresh, Chaudhari, Aparna and Sundaray, Jitendra Kumar (2019) Revealing liver specific microRNAs linked with carbohydrate metabolism of farmed carp, Labeo rohita (Hamilton, 1822). Genomics. iconpdf

  • Jasrotia, Rahul Singh, Yadav, Pramod Kumar, Iquebal, Mir Asif, Bhatt, S.B., Arora, Vasu,Angadi, U.B., Tomar Rukam Singh, Jaiswal, Sarika, Rai, Anil, Kumar, Dinesh (2019). VigSatDB: Genome wide microsatellite DNA marker database of three species of Vigna for germplasm characterization and improvement. Database: The Journal of Biological Databases and Curation.iconpdf

  • Sheoran, Sonia,Jaiswal Sarika, Kumar, Deepender, Raghav, Nishu, Sharma, Ruchika, Pawar, Sushma, Paul, Surinder, Iquebal, M.A., Jaiswar, Akanksha, Sharma, Pradeep, Singh, Rajender, Singh, CB Gupta, Arun, Kumar, Neeraj,Angadi, U.B., Rai, Anil, Singh, G.P., Kumar, Dinesh, Tiwari, Ratan (2018). Uncovering genomic regions associated with 36 agro-morphological traits in Indian spring wheat using GWAS. Frontiers in Plant Science.iconpdf

  • Jaiswal, Sarika, Iquebal, M.A., Arora, Vasu, Angadi, U.B., Khokar, R.S., Sharma, Pradeep, Sheoran, Sonia, Singh, G.P., Rai, Anil, Kumar, Tiwari, Ratan, Dinesh (2019). Development of species specific putative miRNA and its target prediction tool in wheat (Triticum aestivum L.). Scientific Reports, DOI : 10.1038/s41598-019-40333-y iconpdf

  • Singh, Rajender, Iquebal, MA, Mishra, CN, Jaiswal, Sarika, Kumar, Deepender, Raghav, Nishu, Paul, Surinder, Sheoran, Sonia, Sharma, Pradeep, Gupta, Arun, Tiwari, Vinod, Angadi, UB, Kumar, Neeraj, Rai, Anil, Singh, GP, Kumar, Dinesh and Tiwari, Ratan (2019) Development of model web-server for crop variety identification using throughput SNP genotyping data. Scientific Reports (Nature Group of Journal). iconpdf

  • Das, Ritwika, Arora, Vasu, Jaiswal, Sarika, Iquebal, MA,Angadi, UB, Singh, Rakesh, Shil, Sandip, Rai, Anil and Kumar Dinesh (2018). PolyMorphPredict: Web server for rapid polymorphic SSR locus discovery from whole genome and transcriptome data. Frontiers in Plant Sciences.

  • Jaiswal, Sarika, Antala, Tushar J., Kheni, Jashminkumar, Chopra, Meenu, Mandavia, M. K., Tomar, Rukam S., Jasrotia, Rahul Singh, Iquebal, M.A., Angadi, U.B., Rai, Anil, Kumar, Dinesh (2017) Transcriptomic signature of drought response in pearl millet (Pennisetum glaucum (L.) and development of web-genomic resources. Nature Scientific Reports: iconpdf

  • Jaiswal, Sarika, Sheoran, Sonia, Arora, Vasu, Angadi, U.B., Iquebal, M.A., Raghav, Nishu, Aneja, Bharti, Kumar Deepender, Khokar, R.S., Sharma, Pradeep, Singh, G.P., Rai, Anil, Tiwari, Ratan, Kumar, Dinesh. (2017). Putative Microsatellite DNA Marker-Based Wheat Genomic Resource for Varietal Improvement and Management. Frontiers in Plant Sciences. iconpdf

  • Iquebal, Mir A, Jaiswal, Sarika, Mahato, Ajay K, Jayaswal, Pawan K, Angadi, U.B., Kumar, Neeraj, Sharma, Nimisha, Singh, Anand, Srivastav, Manish, Praksh, Jai, Singh, Sanjay K, Khan, Kasim, Mishra, Rupesh K, Rajan, Shailendra, Bajpai, Anju, Sandhya, BS, Nischita, Puttaraju, Ravishankar, KV, Dinesh, MR, Rai, Anil, Kumar, Dinesh, Sharma, Tilak R., Singh, Nagendra K. (2017). MiSNPDb: a web based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation. Nature Scientific Reports 7, Article number: 14968(2017) iconpdf

  • U.B. Angadi,Rahul Singh Jasrotia, Mir Asif Iquebal, Pramod Kumar Yadav, Neeraj Kumar, Sarika Jaiswal, Anil Rai, Dinesh Kumar. Development of transcriptome based web genomic resources of yellow mosaic disease in Vigna mungo. Physiology and Molecular Biology of Plants (2017). iconpdf

  • Angadi, U.B.,Sharma, Pradeep, Tiwari, Ratan, Saharan,M.S., Sharma, Indu, Kumar, Jitender, Mishra, Shefali, Muthusamy, Senthilkumar K., Gupta, R.K., Jaiswal, Sarika, Iquebal, Mir Asif, Kumar, Neeraj, Fatma, Samar, Rai, Anil, Kumar, Dinesh (2016) Draft Genome Sequence of the Karnal Bunt fungus, Tilletia indica Mitra:Two monosporidial lines (PSWKBGH-1 and 2). Genome Announcement 4(5), e00928-16, DOI:10.1128/genomeA.00928-16.

  • Angadi, U.B. (2016). Introduction to LINUX.In training manual entitled “Computational Approaches for NGS Data Analysis and Genomic Selection”. ICAR-IIWBR, Karnal and ICAR-IASRI, New Delhi. Pp. 16-25.

  • Angadi U.B.Iquebal, MA, Sarika, Sablok, Gaurav, Arora, Vasu, Kumar, Sunil, Rai, Anil and Kumar, Dinesh (2015). SBMDb: First whole genome microsatellite DNA marker database of sugar beet for bioenergy and industrial applications. Database: The Journal of Biological Databases and Curation (Oxford Journal). 2015: bav111. .

  • Angadi U.B.,Jaiswal, Sarika, Dhanda, S.K., Iquebal, M.A., Arora, Vasu, Shah, Tejas M., Joshi, Chaitanya G., Rahgava, G.P.S., Rai, Anil and Kumar, Dinesh (2016). BIS-CATTLE: A Web Server for Breed Identification using Microsatellite DNA Markers. American Journal of Bioinformatics, http://thescipub.com/abstract/10.3844/ofsp.10407. .

  • Angadi U.B. and S S Patil (2012). Network Based Knowledge Management System in Indian Agricultural Extension. International Journal of agriculture science and veterinary Medicine, 1(1), pp.75-81.

  • Angadi U.B. and Venkatesulu M. (2011). Structural SCOP superfamily level classification Using Unsupervised Machine Learning. IEEE Transaction on Computational Biology and Bioinformatics, Issue: 99.

  • Angadi U.B., Venkatesulu M. (2010). FuzzyART neural network for protein classification. IEEE Transaction on Computational Biology and Bioinformatics, 8(5), pp. 825-41.

  • Angadi U.B. and M. Venkatesulu. (2010) GENETAL : A New Technique for Feature Extraction from Large Set of Biological Sequences and Its Use in Classification. Journal of Computational Intelligence in Bioinformatics, 3(1), pp. 49–61.

  • Angadi U.B., Anandan, S. and Ramachandra, K.S. (2009). Visual Data mining tool and Data base for assessing district wise animal and feed resources in India. Indian Journal of Animal Sciences, 79 (1), pp. 89-92.

  • Angadi U.B., Raju, S.S., Anandan, S. and Ramachandra, K.S. (2005). Database on availability and requirement of animal feed resources in the Country. Indian Journal of Animal Sciences, 75 (9): 1083-1086.

  • Raju, S.S., Anandan, S., Angadi U.B. and Ramachandra, K.S. (2005). Assessment of animal and feed resource availability in Coastal region of Karnataka. Indian Journal of Animal Nutrition, 21(3): 206-209.

  • Anandan, S., Raju, S.S., Angadi U.B.and Ramachandra, K.S. (2005). Livestock and feed resources status of Malnad region in Karnataka. Animal Nutrition and Feed Technology, 5(1): 99-105.

  • Ramachandra, K.S., Raju, S.S., Anandan, S. and Angadi U.B. (2005). Animal feed resources and its impact on livestock production in India. Indian Dairyman, 57(6): 39-47.

  • Raju,S.S., Anandan,S, Angadi U.B., Ananthram,K, Prasad,C.S. and Ramachandra,K.S. (2002). Assessment of animal feed resources availability in Southern Karnataka region. Indian Journal of Animal Sciences, 72(2): 1059-1063.

Books Published

  • K.S. Ramachandra, V.K. Taneja, K.T. Sampath, S. Anandan, Angadi U.B. (2007). Livestock Feed Resources in Different Agro Ecosystems of India : Availability, Requirement and their Management. The Director, National Institute of Animal Nutrition and Physiology, Bangalore.

Books/Manual/Annual Reports Edited

  • C. S. Prasad, K.S.Prasad, S. Jash, D. Rajendran, S. Anandan, S.B.N. Rao, Angadi U.B. (2012). Compendium for madel training program on Feed Resource Management and sustainable Milk Production. The Director, National Institute of Animal Nutrition and Physiology, Bangalore.

  • K. Anantharam, Manpal Sridhar, Angadi U.B., J. Ghosh, A. P. Kolte (2007). Institute Annual Report 2006-07. The Director, National Institute of Animal Nutrition and Physiology, Bangalore.

  • K. Anantharam, Manpal Sridhar, Angadi U.B., J. Ghosh, A. P. Kolte (2006). Institute Annual Report 2005-06. The Director, National Institute of Animal Nutrition and Physiology, Bangalore.

  • K. Anantharam, Manpal Sridhar, Angadi U.B., J. Ghosh, A. P. Kolte (2005). Compendium of one day workshop on Recent Advances in Feeding and Management of Livestock. The Director, National Institute of Animal Nutrition and Physiology, Bangalore.

  • K. Anantharam, Manpal Sridhar, Angadi U.B., J. Ghosh, A. P. Kolte (2005). Institute Annual Report 2004-05. The Director, National Institute of Animal Nutrition and Physiology, Bangalore.

  • K. Anantharam, Manpal Sridhar, Angadi U.B., J. Ghosh, A. P. Kolte (2004). Institute Annual Report 2003-04. The Director, National Institute of Animal Nutrition and Physiology, Bangalore.

Book /Manual Chapters

  • Angadi U.B., A. P. Kolte, A. Dhali, J. Ghosh (2012). Book: Animal Nutrition & Reproductive Physiology, Chapter: Application of Bioinformatics tools to understand the structures and functions of proteins. Satish Serial Publication House, Azapur, Delhi.

  • A. P. Kolte, A. Dhali, A. K. Samantha, S. Senani, Angadi U.B. (2012). Book: Animal Nutrition & Reproductive Physiology, Chapter: Characterization of mixed microbial signatures using Next Generation Sequencing. Satish Serial Publication House, Azapur, Delhi.

  • S. Anandan, S. Jash, Angadi U.B., K. Giridhar (2012). Book Animal Nutrition & Reproductive Physiology, Chapter: Refined Approaches for assessment of feed availability & Requirements. Satish Serial Publication House, Azapur, Delhi.

  • Angadi U.B., A. P. Kolte (2011). Training Manual: Introduction to LINUX operating System (Repeated). NIANP, Bangalore.

  • Angadi U.B. (2011). Training Manual: Protein sequence analysis using classification techniques based various similarity metrics (Repeated). NIANP, Bangalore.

  • Angadi U.B. (2011). Training Manual: Network based Knowledge management system in Indian livestock management /agriculture extension (Repeated). NIANP, Bangalore.

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