Das J, Kumar B, Saha B, Jaiswal S, Iquebal M.A., Angadi U.B. and Kumar D (2023), Genome-wide identification and characterization of tissue specific long non-coding RNAs and circular RNAs in common carp (Cyprinus carpio L.). Front. Genet. 14:1239434. 
Srivastava, S., Merchant, M., McClain J. Craig, Rai, A., Chaturvedi, K.K., Angadi U.B. , Mishra, C.D. and Rai N. Shesh* (2023). Advanced Multivariable Statistical Analysis Interactive Tool for Handling Missing Data and Confounding Covariates for Label-free LC-MS Proteomics Experiments, Current Bioinformatics,18(5)..
Kumar, B., Saha, B., Jaiswal, S., Angadi U.B. , Rai, A., Iquebal, M.A.* (2023) Genome wide identification and characterization of tissue specific non-coding RNAs in Black pepper (Piper nigrum L.) Frontiers in Plant Science
Rasal, K.D., Dixit, S., Swain, P.P, Siriyappagouder, P., Kumar, R., Iquebal, M.A., Vasam, M., Debbarma, J., Jaiswal, S., Angadi U.B. , Rai, A., Kumar, D., Sundaray, J.K. (2023) Identification of host-specific skin-mucus and gut microbiota in snakehead murrel (Channa striata) (Bloch, 1793) using metagenomics approach. Journal of Applied Biology & Biotechnology. 2023 (DOI: https://doi.org/10.7324/JABB.2023.11508
Kumar, S., Behera, S.K., Gururaj, K., Chaurasia, A., Murmu, S., Prabha, R., Angadi U.B. , Pawaiya, R.S., Rai, A. (2023). In silico mutation of aromatic with aliphatic amino acid residues in Clostridium perfringens epsilon toxin (ETX) reduces its binding efficiency to Caprine Myelin and lymphocyte (MAL) protein receptors. J Biomol Struct Dyn. 2:1-13. PMID: 37129165
A., Bulbul, Haque, Md. A., Iquebal, M.A., Jaiswal, S., Angadi U.B. , Kumar, D., Rai, A. (2023) DeepAProt: Deep learning based abiotic stress protein sequence classification and identification tool in cereals. Frontiers in Plant Science
Jaiswal, S., Aneja, B., Jaisri J., Pandey, B., Chhokar, R.S., Gill, S.C., Ahlawat, O.P., Kumar, A., Angadi U.B. , Rai, A., Tiwari, R., Iquebal, M.A., Kumar, D. (2022) Unveiling wheat microbiome under varied agricultural field conditions. Microbiology Spectrum
Kumar, B., Kumar, A., Jaiswal, S., Iquebal, M.A.,Angadi U.B. , Tomar, R.S., Rai, A., Kumar, D. (2022) Genome-wide identification of long non-coding RNAs in pearlmillet (Pennisetum glaucum (L.)) genotype subjected to drought stress. MDPI Agronomy (2073-4395)
Negi, A., Singh, K., Jaiswal, S., George, J. K.,Angadi U.B. , Iquebal, M.A., Umadevi P., Rai, A., Kumar, D. (2022) Rapid genome wide location specific polymorphic SSR markers in black pepper genotypes by GBS approach. Frontiers in Plant Science
Paul, S., Duhan, J.S., Jaiswal, S., Angadi U.B. , Sharma, R., Raghav, N., Gupta, O.P., Sheoran, S., Sharma, P., Singh, R., Rai, A., Singh, G.P., Kumar, D., Iquebal, M.A., Tiwari, R. (2022) RNA-Seq analysis of developing grains of wheat to intrigue into the complex molecular mechanism of the heat stress response. Frontiers in Plant Science.
Khan, A., Singh, K., Jaiswal, S., Raza, M., Jasrotia, R.S., Kumar, A., Gurjar, A.K.S, Kumari, J., Nayan, V., Iquebal, M.A., Angadi U.B. , Rai, A., Datta, T.K. and Kumar, D. (2022) Whole-Genome-Based Web Genomic Resource for Water Buffalo (Bubalus bubalis). Front. Genet. 13:809741.
Gaur, A., Jindal, Y., Tiwari, R., Kumar, D., Kaushik, D., Singh, J., Narwal, S., Jaiswal, S., Iquebal, M.A., Angadi U.B., Singh, G., Rai, A., Singh, G.P., Sheoran, S. (2022) GWAS to identify novel QTNs for WSC accumulation in wheat peduncle under different water regimes. Frontiers in Plant Science.
Sheoran, S., Jaiswal, S., Raghav, N., Sharma, R., Sabhyata, Gaur, A., Jaisri J., Tandon, G., Singh, S., Sharma, P., Singh, R., Iquebal, M.A., Angadi U.B., Gupta, A., Singh, G., Singh, G.P., Rai, A., Kumar, D., Tiwari, R. (2022) Genome-Wide Association Study and Post-genome-Wide Association Study Analysis for Spike Fertility and Yield Related Traits in Bread Wheat. Frontiers in Plant Science.
Jha, Y., Dehury, B., Kumar, S.P.J., Chaurasia, A., Singh, U.B., Yadav, M.K., Angadi U.B., Ranjan, R., Tripathy, M., Subramanian, R.B., Kumar, S., Simal-Gandara, J. Delineation of molecular interactions of plant growth promoting bacteria induced β-1,3-glucanases and guanosine triphosphate ligand for antifungal response in rice: a molecular dynamics approach. Mol Biol Rep. 2021.
Kumar A., Mishra D.C., Angadi U.B. , Yadav R., Rai A., Kumar D. Inhibition Potencies of Phytochemicals Derived from Sesame Against SARS-CoV-2 Main Protease: A Molecular Docking and Simulation Study.
Jaiswal, S., Jaisri J., Kumari, J., Iquebal, M.A., Gujjar, A.K.S., Nayan, V., Angadi U.B. , Kumar, S., Kumar, R., Datta, T.K., Rai, A., Kumar, D. (2021). Genome wide prediction, mapping and development of genomic resources of Mastitis associated genes in Buffalo. Frontiers in Veterinary Sciences.
George, J.K., Shelvy, S., Fayad, M., Umadevi P, Angadi U.B. , Iquebal, M. A., Jaiswal, S., Rai, A., Kumar, D. (2021). Denovo transcriptome sequencing assisted identification of terpene synthases from black pepper (Piper nigrum) berry. Physiology and Molecular Biology of Plants
Angadi U.B. , Rai, A. & Uma, G. MBFerns: classification and extraction of actionable knowledge using Multi-Branch Ferns-based Naive Bayesian classifier. Soft Comput (2021).
Iquebal, M.A., Jaiswal S., Singh, B.P., Prabha, R., Jasrotia, R.S., Angadi U.B. , Singh, D.P., Gupta, V., Rai, A. and Kumar, D. (2021). Fungal genomic resources for strain identification and diversity analysis of 1900 fungal species. Journal of Fungi.
Angadi,U. B., Animut, G., Anandan, S., Blümmel, M., Moyo, S., Rahman, H., Jones, C. (2021). FeedBase Ethiopia: The Role of Database in Developing Livestock Feed in proceedings of India–Africa Partnerships for Food Security and Capacity Building South–South Cooperation Editors: Modi, Renu, Venkatachalam, Meera (Eds.), in series of International Political Economy Series, Springer Nature Switzerland AG
Negi A, George Kokkat J, Jasrotia R.S., Madhavan S., Jaiswal S., Angadi U.B. , Iquebal M.A., Kalathil Palliyarakkal M., Palaniyandi U., Rai A., Kumar D. Drought responsiveness in black pepper (Piper nigrum L.): Genes associated and development of a web-genomic resource. Physiol Plant.
Rasal, Kiran D.,Iquebal, Mir Asif, Dixit, Sangita, Vasam, Manohar,Jaiswal,Sarika, Sahoo, Lakshman, Jagannadham, Jaisri, Nandi, Samiran, Mahapatra, Kanta Das, Rasal, Avinash, Udit, Uday Kumar, Meher, Prem Kumar, Murmu, Khuntia, Angadi, UB, Rai, Anil, Sundaray, Jitendra Kumar and Kumar, Dinesh (2020). Revealing global transcriptional plasticity and modulation in metabolic pathways in liver of genetically improved carp, Jayanti rohu, Labeo rohita fed with high carbohydrate regime. International Journal of Molecular Sciences.
Kumar, D, Kumar, A, Chhokar, V, Gangwar, O.P., Bhardwaj,S.C, Sivasamy M, Prasad,Sai, Sheoran,S.V, Singh, Sonia, Sharma, Rajender, Iquebal ,M A, Jaiswal,Sarika, U.B. Angadi, Singh,Gyanendra,Rai Anil,Singh, G.P.,Kumar, Dinesh,and Tiwari, Ratan (2020) Genome-wide association studies in diverse spring wheat panel for Stripe, Stem and Leaf rust resistance. Frontiers in Plant Science, 11, Article number 748
Deepender Kumar, Vinod Chhokar, Sonia Sheoran, Rajender Singh, Pradeep Sharma, Sarika Jaiswal, M. A. Iquebal, Akanksha Jaiswar, J. Jaisri,U.B. Angadi, Anil Rai, G. P. Singh, Dinesh Kumar, Ratan Tiwari, Characterization of genetic diversity and population structure in wheat using array based SNP markers, Mol Biol Rep (2019).
Mir Asif Iquebal, Pradeep Sharma, Rahul Singh Jasrotia, Sarika Jaiswal, Amandeep Kaur, Monika Saroha, U. B. Angadi, Sonia Sheoran, Rajender Singh, G. P. Singh, Anil Rai, Ratan Tiwari & Dinesh Kumar. RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat, Scientific Reports volume 9, Article number: 13917 (2019)
Samireddypalle. A, Prasad K.V.S.V., Ravi D., Khan A.A., Reddy R. U.B. Angadi, Blümmel M. Embracing whole plant optimization of rice and wheat to meet the growing demand for food and feed, Field Crops Research
U. B. Angadi, K. K. Chaturvedi, S. Srivastava and Rai Anil. "A Novel Way of Comparing Protein 3D Structure Using Graph Partitioning Approach," in IEEE/ACM Transactions on Computational Biology and Bioinformatics.
Rasal, Kiran D., Iquebal, Mir Asif,Jaiswal, Sarika, Dixit, Sangita, Vasam, Manohar, Nandi, Samiran, Raza, Mustafa, Sahoo, Lakshman, Angadi, UB, Rai Anil, Kumar, Dinesh, and Sundaray, Jitendra Kumar Sundaray (2019). Liver specific microRNAs identification in farmed carp, Labeo bata (Hamilton, 1822) fed with starch diet using high-throughput sequencing. Marine Biotechnology
Rasal, Kiran D., Iquebal, Mir Asif, Pandey, Amrendra, Behera, Parmeswari, Jaiswal, Sarika, Vasam, Manohar, Dixti, Sangita, Raza, Mustafa, Sahoo, L., Nandi, Samiran, Angadi, UB, Rai Anil Kumar, Dinesh Nagpure, Naresh, Chaudhari, Aparna and Sundaray, Jitendra Kumar (2019) Revealing liver specific microRNAs linked with carbohydrate metabolism of farmed carp, Labeo rohita (Hamilton, 1822). Genomics.
Jasrotia, Rahul Singh, Yadav, Pramod Kumar, Iquebal, Mir Asif, Bhatt, S.B., Arora, Vasu,Angadi, U.B., Tomar Rukam Singh, Jaiswal, Sarika, Rai, Anil, Kumar, Dinesh (2019). VigSatDB: Genome wide microsatellite DNA marker database of three species of Vigna for germplasm characterization and improvement. Database: The Journal of Biological Databases and Curation.
Sheoran, Sonia,Jaiswal Sarika, Kumar, Deepender, Raghav, Nishu, Sharma, Ruchika, Pawar, Sushma, Paul, Surinder, Iquebal, M.A., Jaiswar, Akanksha, Sharma, Pradeep, Singh, Rajender, Singh, CB Gupta, Arun, Kumar, Neeraj,Angadi, U.B., Rai, Anil, Singh, G.P., Kumar, Dinesh, Tiwari, Ratan (2018). Uncovering genomic regions associated with 36 agro-morphological traits in Indian spring wheat using GWAS. Frontiers in Plant Science.
Jaiswal, Sarika, Iquebal, M.A., Arora, Vasu, Angadi, U.B., Khokar, R.S., Sharma, Pradeep, Sheoran, Sonia, Singh, G.P., Rai, Anil, Kumar, Tiwari, Ratan, Dinesh (2019). Development of species specific putative miRNA and its target prediction tool in wheat (Triticum aestivum L.). Scientific Reports, DOI : 10.1038/s41598-019-40333-y
Singh, Rajender, Iquebal, MA, Mishra, CN, Jaiswal, Sarika, Kumar, Deepender, Raghav, Nishu, Paul, Surinder, Sheoran, Sonia, Sharma, Pradeep, Gupta, Arun, Tiwari, Vinod, Angadi, UB, Kumar, Neeraj, Rai, Anil, Singh, GP, Kumar, Dinesh and Tiwari, Ratan (2019) Development of model web-server for crop variety identification using throughput SNP genotyping data. Scientific Reports (Nature Group of Journal).
Das, Ritwika, Arora, Vasu, Jaiswal, Sarika, Iquebal, MA,Angadi, UB, Singh, Rakesh, Shil, Sandip, Rai, Anil and Kumar Dinesh (2018). PolyMorphPredict: Web server for rapid polymorphic SSR locus discovery from whole genome and transcriptome data. Frontiers in Plant Sciences.
Jaiswal, Sarika, Antala, Tushar J., Kheni, Jashminkumar, Chopra, Meenu, Mandavia, M. K., Tomar, Rukam S., Jasrotia, Rahul Singh, Iquebal, M.A., Angadi, U.B., Rai, Anil, Kumar, Dinesh (2017) Transcriptomic signature of drought response in pearl millet (Pennisetum glaucum (L.) and development of web-genomic resources. Nature Scientific Reports:
Jaiswal, Sarika, Sheoran, Sonia, Arora, Vasu, Angadi, U.B., Iquebal, M.A., Raghav, Nishu, Aneja, Bharti, Kumar Deepender, Khokar, R.S., Sharma, Pradeep, Singh, G.P., Rai, Anil, Tiwari, Ratan, Kumar, Dinesh. (2017). Putative Microsatellite DNA Marker-Based Wheat Genomic Resource for Varietal Improvement and Management. Frontiers in Plant Sciences.
Iquebal, Mir A, Jaiswal, Sarika, Mahato, Ajay K, Jayaswal, Pawan K, Angadi, U.B., Kumar, Neeraj, Sharma, Nimisha, Singh, Anand, Srivastav, Manish, Praksh, Jai, Singh, Sanjay K, Khan, Kasim, Mishra, Rupesh K, Rajan, Shailendra, Bajpai, Anju, Sandhya, BS, Nischita, Puttaraju, Ravishankar, KV, Dinesh, MR, Rai, Anil, Kumar, Dinesh, Sharma, Tilak R., Singh, Nagendra K. (2017). MiSNPDb: a web based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation. Nature Scientific Reports 7, Article number: 14968(2017)
U.B. Angadi,Rahul Singh Jasrotia, Mir Asif Iquebal, Pramod Kumar Yadav, Neeraj Kumar, Sarika Jaiswal, Anil Rai, Dinesh Kumar. Development of transcriptome based web genomic resources of yellow mosaic disease in Vigna mungo. Physiology and Molecular Biology of Plants (2017).
Angadi, U.B.,Sharma, Pradeep, Tiwari, Ratan, Saharan,M.S., Sharma, Indu, Kumar, Jitender, Mishra, Shefali, Muthusamy, Senthilkumar K., Gupta, R.K., Jaiswal, Sarika, Iquebal, Mir Asif, Kumar, Neeraj, Fatma, Samar, Rai, Anil, Kumar, Dinesh (2016) Draft Genome Sequence of the Karnal Bunt fungus, Tilletia indica Mitra:Two monosporidial lines (PSWKBGH-1 and 2). Genome Announcement 4(5), e00928-16, DOI:10.1128/genomeA.00928-16.
Angadi, U.B. (2016). Introduction to LINUX.In training manual entitled “Computational Approaches for NGS Data Analysis and Genomic Selection”. ICAR-IIWBR, Karnal and ICAR-IASRI, New Delhi. Pp. 16-25.
Angadi U.B.Iquebal, MA, Sarika, Sablok, Gaurav, Arora, Vasu, Kumar, Sunil, Rai, Anil and Kumar, Dinesh (2015). SBMDb: First whole genome microsatellite DNA marker database of sugar beet for bioenergy and industrial applications. Database: The Journal of Biological Databases and Curation (Oxford Journal). 2015: bav111. .
Angadi U.B.,Jaiswal, Sarika, Dhanda, S.K., Iquebal, M.A., Arora, Vasu, Shah, Tejas M., Joshi, Chaitanya G., Rahgava, G.P.S., Rai, Anil and Kumar, Dinesh (2016). BIS-CATTLE: A Web Server for Breed Identification using Microsatellite DNA Markers. American Journal of Bioinformatics, http://thescipub.com/abstract/10.3844/ofsp.10407. .
Angadi U.B. and S S Patil (2012).
Network Based Knowledge Management System in Indian Agricultural Extension.
International Journal of agriculture science and veterinary Medicine, 1(1), pp.75-81.
Angadi U.B. and Venkatesulu M. (2011).
Structural SCOP superfamily level classification Using Unsupervised Machine Learning.
IEEE Transaction on Computational Biology and Bioinformatics, Issue: 99.
Angadi U.B., Venkatesulu M. (2010).
FuzzyART neural network for protein classification.
IEEE Transaction on Computational Biology and Bioinformatics, 8(5), pp. 825-41.
Angadi U.B. and M. Venkatesulu. (2010)
GENETAL : A New Technique for Feature Extraction from Large Set of Biological Sequences and Its Use in Classification.
Journal of Computational Intelligence in Bioinformatics, 3(1), pp. 49–61.
Angadi U.B., Anandan, S. and Ramachandra, K.S. (2009).
Visual Data mining tool and Data base for assessing district wise animal and feed resources in India.
Indian Journal of Animal Sciences, 79 (1), pp. 89-92.
Angadi U.B., Raju, S.S., Anandan, S. and Ramachandra, K.S. (2005).
Database on availability and requirement of animal feed resources in the Country.
Indian Journal of Animal Sciences, 75 (9): 1083-1086.
Raju, S.S., Anandan, S., Angadi U.B. and Ramachandra, K.S. (2005).
Assessment of animal and feed resource availability in Coastal region of Karnataka.
Indian Journal of Animal Nutrition, 21(3): 206-209.
Anandan, S., Raju, S.S., Angadi U.B.and Ramachandra, K.S. (2005).
Livestock and feed resources status of Malnad region in Karnataka.
Animal Nutrition and Feed Technology, 5(1): 99-105.
Ramachandra, K.S., Raju, S.S., Anandan, S. and Angadi U.B. (2005).
Animal feed resources and its impact on livestock production in India.
Indian Dairyman, 57(6): 39-47.
Raju,S.S., Anandan,S, Angadi U.B., Ananthram,K, Prasad,C.S. and Ramachandra,K.S. (2002).
Assessment of animal feed resources availability in Southern Karnataka region.
Indian Journal of Animal Sciences, 72(2): 1059-1063.
